CATH Domain: 1nu4A00 XML data for domain: 1nu4A00

Molscript image for 1nu4A00
1nu4A00
PDB coordinates for domain 1nu4A00

PDB 1nu4, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.7
3.30.70.330.7.1
3.30.70.330.7.1.1
3.30.70.330.7.1.1.1
3.30.70.330.7.1.1.1.1

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Segment boundaries for domain 1nu4A00

Chopping figure for domain 1nu4A00
DomainStart PDB ResidueStop PDB Residue
1nu4A00 7 97

Structural Neighbourhood (40 entries)

There are 40 matching structural neighberhood comparisons for CATH ID 3.30.70.330.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 40 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1oiaA00 94.15 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 93 94 1.70 1.80
1rk8A00 89.83 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 12 89 2.97 3.34
1cvjA01 89.79 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 29 81 1.63 2.00
2pehA01 89.44 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 13 86 2.48 2.86
2qfjA02 89.24 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 20 92 3.12 3.38
1h2vZ00 89.24 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 20 92 3.83 4.15
2do0A01 89.02 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 26 81 1.87 2.30
1x5uA01 88.70 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 25 84 2.13 2.52
1cvjG02 88.55 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 27 86 2.27 2.61
3feyB00 88.35 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 20 87 4.30 4.91
1fxlA02 87.96 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 22 79 1.85 2.34
1x5oA01 86.92 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 16 83 2.12 2.54
1jmtA00 86.89 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 15 81 2.17 2.66
2dgsA01 86.36 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 14 86 2.84 3.27
1hl6C00 86.19 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 13 70 1.96 2.79
1fxlA01 85.80 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 18 74 1.94 2.60
1sjqA00 85.59 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 18 91 3.19 3.50
1no8A00 85.54 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 25 83 2.57 3.08
2jwnA01 85.32 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 19 73 2.30 3.15
1uw4A00 84.95 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 13 84 2.34 2.77
1fjeB02 84.56 NucleolinMesocricetus auratus 3.30.70.330 84 23 85 3.46 4.04
1sjrA00 84.43 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 25 81 3.25 3.99
1ufwA00 84.39 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 16 82 3.06 3.73
2errA01 84.36 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 19 86 3.95 4.55
1fjeB01 83.43 NucleolinMesocricetus auratus 3.30.70.330 81 19 87 3.50 3.98
2u1aA00 82.75 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 25 84 2.93 3.46
1qm9A02 80.70 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 17 86 4.12 4.75
1sxlA00 80.34 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 23 84 3.24 3.83
1r8hA00 79.45 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 8 87 4.12 4.69
1konA03 79.11 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 5 75 3.69 4.87
1qm9A01 78.79 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 19 87 4.12 4.69
1cvjH02 78.50 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 30 48 2.19 4.53
3sxlA02 78.46 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 27 54 2.59 4.71
1in0A01 78.24 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 11 76 3.22 4.19
2pd1A01 77.62 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 6 83 3.96 4.72
2rhsD06 77.52 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 12 73 3.61 4.90
1l2mA00 77.31 Tomato yellow leaf curl Sardinia virusReplication-associated protein 3.40.1310.20 118 12 72 3.25 4.51
1eayD00 76.85 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 75 3.61 4.76
1b7yB06 75.21 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 3 73 3.38 4.59
1ft8A01 70.76 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 9 59 2.85 4.80
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Displaying entries 1 to 40 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nu4A00
RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY
AKTDSDIIAKM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nu4A00
AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP
MRIQYAKTDSDIIAKMK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"