CATH Domain: 1npeA00 XML data for domain: 1npeA00

Molscript image for 1npeA00
1npeA00
PDB coordinates for domain 1npeA00

PDB 1npe, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.120 6 Propellor
2.120.10 Neuraminidase
2.120.10.30 TolB, C-terminal domain Gene3D
2.120.10.30.11
2.120.10.30.11.1
2.120.10.30.11.1.1
2.120.10.30.11.1.1.1
2.120.10.30.11.1.1.1.1

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Segment boundaries for domain 1npeA00

Chopping figure for domain 1npeA00
DomainStart PDB ResidueStop PDB Residue
1npeA00 913 1175

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.120.10.30.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1l0qA01 77.48 Methanosarcina mazeiORF492 2.130.10.10 295 13 82 3.87 4.68
1k32A01 76.32 Tricorn proteaseTricorn protease [EC:3.4.21.-]Thermoplasma acidophilum 2.120.10.60 272 8 83 3.40 4.07
1pguB01 76.20 Mating projection tipResponse to osmotic stressNucleusActin bindingActin filament depolymerization 2.130.10.10 279 4 79 3.60 4.50
1nr0A02 76.17 Caenorhabditis elegansOvipositionLocomotionPositive regulation of locomotionNematode larval development 2.130.10.10 312 7 75 3.78 4.98
1zgkA00 75.73 Kelch-like ECH-associated protein 1NucleusCentrosomeHomo sapiensUbiquitin mediated proteolysis 2.120.10.80 273 7 86 2.81 3.24
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1npeA00
GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS
PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI
LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK
EMDTFHPHKQTRLYGITIALSQC
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1npeA00
GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS
PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI
LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISK
EMDTFHPHKQTRLYGITIALSQCPQGH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"