CATH Domain: 1nnfA02 XML data for domain: 1nnfA02

Molscript image for 1nnfA02
1nnfA02
PDB coordinates for domain 1nnfA02

PDB 1nnf, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.3
3.40.190.10.3.1
3.40.190.10.3.1.1
3.40.190.10.3.1.1.1
3.40.190.10.3.1.1.1.1

Segment boundaries for domain 1nnfA02

Chopping figure for domain 1nnfA02
DomainStart PDB ResidueStop PDB Residue
1nnfA01 102 225
1nnfA01 278 308
1nnfA02 1 101
1nnfA02 226 277

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.40.190.10.3.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xvxA01 91.86 Yersinia enterocolitica (type O:8)YfuA 3.40.190.10 155 36 95 1.58 1.65
3e13X01 90.06 Putative iron-uptake ABC transport system,periplasmic iron-binding proteinCampylobacter jejuniProtein bindingIron(III) transport system substrate-binding proteinABC transporters 3.40.190.10 148 33 95 1.70 1.78
1atgA01 88.08 Azotobacter vinelandiiBinding protein 3.40.190.10 122 19 79 1.48 1.86
3gzgA01 87.56 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 29 76 1.43 1.86
1sbpA01 86.38 ABC transportersSalmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding protein 3.40.190.10 151 14 87 2.63 3.01
3cvgA01 84.06 3.40.190.10 144 17 79 2.47 3.10
3c9hA01 83.08 Agrobacterium tumefaciens str. C58ABC transporter, substrate binding protein (Iron)Iron(III) transport system substrate-binding proteinABC transporters 3.40.190.10 189 16 77 2.27 2.94
1anfA01 82.65 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinMaltose-binding periplasmic proteinDisaccharide binding 3.40.190.10 179 19 81 2.61 3.20
1eu8A01 82.12 Pyrococcus furiosusMultiple sugar transport system substrate-binding proteinTrehalose/maltose binding protein 3.40.190.10 190 19 77 2.49 3.20
1potA01 82.06 ABC transportersOuter membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding protein 3.40.190.10 166 15 87 2.99 3.40
1ursB01 81.38 Maltose binding proteinAlicyclobacillus acidocaldarius subsp. acidocaldarius 3.40.190.10 186 19 79 2.84 3.57
1twyA01 80.90 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 17 71 2.74 3.82
1eljA01 80.74 Pyrococcus furiosusMaltooligosaccharide transport system substrate-binding proteinABC transportersMaltotriose-binding protein 3.40.190.10 182 15 81 2.58 3.15
3thiA01 80.28 Paenibacillus thiaminolyticusThiaminase-1 3.40.190.10 175 14 82 2.56 3.11
1xs5A01 77.79 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 6 76 3.63 4.76
1i6aA01 77.23 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 9 65 2.64 4.01
2ql3A01 77.17 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 16 59 2.39 4.04
3fzvD02 76.55 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 15 62 2.71 4.34
1ixcA02 76.55 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 99 12 60 2.96 4.89
1ii5A01 75.15 Polar amino acid transport system substrate-binding proteinSynechocystis sp. PCC 6803Slr1257 protein 3.40.190.10 128 3 75 3.39 4.48
1lstA01 74.97 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 10 75 3.70 4.89
2pyyB01 74.05 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue 3.40.190.10 125 9 72 3.52 4.86
2esnA02 73.94 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 111 7 64 3.13 4.85
Displaying entries 1 to 23 (page 1 of 1)


Domain ATOM Sequence

>pdb|1nnfA02
DITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQ
QTAQKGVPLAPKKDWIALSGRSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNL    

Domain COMBS Sequence

>pdb|1nnfA02
DITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQTIQ
QTAQKGVPLAPKKDWIALSGRSYSGAAVLKASKNQAEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNL    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"