CATH Domain: 1nnfA01 XML data for domain: 1nnfA01

Molscript image for 1nnfA01
1nnfA01
PDB coordinates for domain 1nnfA01

PDB 1nnf, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.4
3.40.190.10.4.1
3.40.190.10.4.1.1
3.40.190.10.4.1.1.1
3.40.190.10.4.1.1.1.1

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Segment boundaries for domain 1nnfA01

Chopping figure for domain 1nnfA01
DomainStart PDB ResidueStop PDB Residue
1nnfA01 102 225
1nnfA01 278 308
1nnfA02 1 101
1nnfA02 226 277

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.190.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xvxA02 92.02 Yersinia enterocolitica (type O:8)YfuA 3.40.190.10 156 34 96 1.89 1.95
1q35A02 85.37 Iron binding protein FbpAMannheimia haemolytica 3.40.190.10 171 18 90 4.24 4.71
3c9hA02 81.79 Agrobacterium tumefaciens str. C58ABC transporter, substrate binding protein (Iron)Iron(III) transport system substrate-binding proteinABC transporters 3.40.190.10 145 14 85 3.17 3.70
1sbpA02 80.43 ABC transportersSalmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding protein 3.40.190.10 158 9 86 3.20 3.72
1potA02 79.66 ABC transportersOuter membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding protein 3.40.190.10 156 12 92 3.31 3.59
1a99A02 77.40 ABC transportersPutrescine-importing ATPase activityPutrescine-binding periplasmic proteinPutrescine transportPutrescine transport system substrate-binding protein 3.40.190.10 174 9 86 3.79 4.40
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nnfA01
SRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQA
VENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVEPYEKLEAPVVSATTAQDKEHAIKLIEEAGL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nnfA01
SRVVVYDHTKLSEKDMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQA
VENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVEPYEKLEAPVVSATTAQDKEHAIKLIEEAGLK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"