CATH Domain: 1nn6A02 XML data for domain: 1nn6A02

Molscript image for 1nn6A02
1nn6A02
PDB coordinates for domain 1nn6A02

PDB 1nn6, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.48
2.40.10.10.48.1
2.40.10.10.48.1.1
2.40.10.10.48.1.1.1
2.40.10.10.48.1.1.1.1

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Segment boundaries for domain 1nn6A02

Chopping figure for domain 1nn6A02
DomainStart PDB ResidueStop PDB Residue
1nn6A01 18 27
1nn6A01 123 228
1nn6A02 28 122
1nn6A02 229 240

Structural Neighbourhood (19 entries)

There are 19 matching structural neighberhood comparisons for CATH ID 2.40.10.10.48.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 19 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1orfA02 93.15 Serine-type endopeptidase activityGranzyme A [EC:3.4.21.78]Protein homodimerization activityNucleusCleavage of lamin 2.40.10.10 105 40 96 1.35 1.40
2hlcA01 91.47 CollagenaseHypoderma lineatum 2.40.10.10 104 27 93 2.27 2.43
1ym0A02 91.43 Eisenia fetidaLumbrokinase F238 2.40.10.10 112 24 93 2.03 2.17
2r0lA02 90.75 Serine-type endopeptidase activityHomo sapiensHepatocyte growth factor activatorProtein bindingProteolysis 2.40.10.10 113 28 89 1.28 1.43
1q3xA03 89.70 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 100 24 86 1.25 1.44
1elvA01 89.57 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 98 26 83 1.24 1.49
2asuB02 88.93 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 103 26 88 2.14 2.41
1fiwA02 88.78 Ovis ariesAcrosinDrug binding 2.40.10.10 120 28 88 2.84 3.22
3govB02 88.64 Serine-type endopeptidase activityCalcium ion bindingProtein homodimerization activityExtracellular spaceProtein binding 2.40.10.10 123 28 83 2.59 3.09
1rrkA02 85.83 Complement factor BComplement bindingHomo sapiensComponent factor B [EC:3.4.21.47]Complement and coagulation cascades 2.40.10.10 117 26 73 2.52 3.43
2pkaA00 83.84 Sus scrofaGlandular kallikrein 2.40.10.10 80 33 63 1.77 2.79
1ky9A01 83.04 Two-component systemSerine-type endopeptidase activityProtease doResponse to temperature stimulusProtein binding 2.40.10.10 88 15 73 2.32 3.14
2qf3A01 81.42 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 102 11 71 3.15 4.43
1sotA01 81.31 Escherichia coli O157:H7Protease degSSerine protease DegS [EC:3.4.21.-] 2.40.10.10 118 14 72 2.34 3.21
1lcyA01 80.96 Serine-type endopeptidase activityHtrA serine peptidase 2 [EC:3.4.21.108]Parkinson's diseaseEndoplasmic reticulum membraneNucleus 2.40.10.10 111 17 73 2.72 3.68
2z9iC01 80.24 Two-component systemPutative serine protease PepD [EC:3.4.21.-]PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B)Mycobacterium tuberculosis 2.40.10.10 91 15 64 1.86 2.88
1l1jA01 79.47 Thermotoga maritimaHeat shock serine protease, periplasmic[EC:3.4.21.-] 2.40.10.10 118 14 65 3.16 4.84
1lvmA02 79.25 Genome polyproteinTobacco etch virus 2.40.10.10 106 9 79 3.93 4.95
1befA02 72.56 2.40.10.10 85 2 59 2.58 4.31
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Displaying entries 1 to 19 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nn6A02
PYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIML
LKLKEKASLTLAVGTHYRPWINQILQA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nn6A02
PYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYNTSTLHHDIML
LKLKEKASLTLAVGTHYRPWINQILQA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"