CATH Domain: 1nm2A01 XML data for domain: 1nm2A01

Molscript image for 1nm2A01
1nm2A01
PDB coordinates for domain 1nm2A01

PDB 1nm2, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.250 Gene3D
3.30.70.250.2
3.30.70.250.2.1
3.30.70.250.2.1.1
3.30.70.250.2.1.1.1
3.30.70.250.2.1.1.1.1

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Segment boundaries for domain 1nm2A01

Chopping figure for domain 1nm2A01
DomainStart PDB ResidueStop PDB Residue
1nm2A01 130 197
1nm2A02 1 129
1nm2A02 198 307

Structural Neighbourhood (77 entries)

There are 77 matching structural neighberhood comparisons for CATH ID 3.30.70.250.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 77 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u8sA01 83.38 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 8 75 2.22 2.94
1konA03 82.99 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 11 90 3.15 3.47
1vr6A01 82.81 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 13 82 3.18 3.85
1eayD00 82.23 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 11 91 2.58 2.83
1o8bA02 82.19 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 14 86 3.01 3.46
1in0A01 81.76 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 8 85 2.84 3.31
1gmuA01 81.66 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 5 83 2.92 3.48
1fxlA01 81.33 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 5 74 2.79 3.74
1lfpA03 81.27 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 11 90 3.08 3.41
1l3kA01 81.07 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 17 76 2.83 3.71
2nyiA02 80.96 3.30.70.260 89 10 73 2.61 3.57
2fgcA03 80.84 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 13 85 3.94 4.63
2f1fA01 80.77 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 13 81 2.76 3.41
2nyiA01 80.67 3.30.70.260 77 2 80 2.88 3.58
1s2oA02 80.66 Synechocystis sp. PCC 6803Slr0953 protein 3.90.1070.10 71 10 76 2.54 3.34
1fxlA02 80.47 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 7 74 2.54 3.43
1x5uA01 80.35 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 8 77 3.03 3.91
1y7pB01 80.10 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 4 77 2.80 3.61
1zpvB00 79.99 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 8 76 3.25 4.25
1rk8A00 79.95 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 14 78 3.71 4.75
3cj8B02 79.94 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]Lysine biosynthesisMetabolic pathwaysEnterococcus faecalis 3.30.70.250 66 12 89 3.38 3.77
2pehA01 79.66 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 13 72 3.10 4.29
1no8A00 79.59 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 4 78 3.19 4.08
1s99A02 79.49 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 7 76 3.03 3.96
1earA02 79.26 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 2 85 4.00 4.68
2qfjA02 79.25 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 5 70 2.95 4.21
2do0A01 79.21 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 5 76 3.22 4.22
1u8sA02 79.19 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 11 76 2.57 3.37
1kn6A00 79.12 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 10 82 3.37 4.10
1u0sA00 79.05 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 8 69 2.55 3.66
1l3kA02 78.97 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 8 78 3.23 4.13
1mw7A03 78.93 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 14 86 2.83 3.27
1x5oA01 78.90 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 8 69 2.99 4.29
1qm9A02 78.68 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 8 76 3.10 4.06
1d8zA00 78.68 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 5 74 3.34 4.50
1dtjA00 78.43 RNA-binding protein Nova-2Homo sapiens 3.30.1370.10 74 8 75 3.25 4.29
2x1fA00 78.32 Protein heterodimerization activityMRNA 3'-end-processing protein RNA15MRNA polyadenylationSaccharomyces cerevisiaeMRNA cleavage 3.30.70.330 94 10 68 2.62 3.85
1q5yD00 78.21 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 14 80 3.27 4.09
2hfvA01 78.15 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 8 75 3.14 4.17
1jqgA01 78.06 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 4 73 2.82 3.83
2errA01 77.91 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 8 77 3.76 4.88
1s99A01 77.77 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 5 80 3.83 4.76
2u2fA00 77.74 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 10 74 3.45 4.65
1sqgA03 77.60 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 10 76 3.50 4.58
1cvjA01 77.60 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 7 76 3.37 4.40
1zzkA00 77.37 SpliceosomeHeterogeneous nuclear ribonucleoprotein KRNA bindingHeterogeneous nuclear ribonucleoprotein KProtein binding 3.30.1370.10 80 8 73 3.50 4.75
2epiB00 77.34 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 8 66 2.77 4.16
2nzcA00 77.23 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 11 80 3.34 4.15
2bopA00 77.15 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 7 74 3.01 4.06
1xtzA02 77.08 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 10 72 3.35 4.61
1fjeB02 77.03 NucleolinMesocricetus auratus 3.30.70.330 84 7 79 3.95 4.95
2qmxA03 76.98 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 10 74 2.92 3.92
2iboA00 76.96 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.930 87 14 67 2.94 4.34
1i1gA02 76.63 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 19 75 3.05 4.05
1uv7A00 76.54 Vibrio choleraeGeneral secretion pathway protein M 3.30.1360.100 74 13 75 3.58 4.73
1utaA00 76.48 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 13 83 3.43 4.13
1uw4A00 76.45 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 7 68 2.97 4.31
2dgsA01 76.32 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 8 76 3.31 4.33
1kp6A00 76.30 Ustilago maydis virus P6KP6 killer toxin 3.30.70.440 79 2 81 4.02 4.96
1yx2A02 76.26 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 10 71 3.18 4.44
3bv8A00 76.08 Lysine biosynthesisMetabolic pathways2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferaseTetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89]2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] 3.30.70.250 84 8 73 3.09 4.19
2rhsD06 76.03 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 13 65 2.97 4.51
1pytA00 75.94 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 7 72 3.17 4.38
2qmwA03 75.73 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 4 73 3.65 4.93
1harA02 75.71 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 4 75 3.46 4.59
1vk8A00 75.67 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 7 65 2.94 4.46
2gx8C02 75.65 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 11 65 3.23 4.92
2x3dF01 75.25 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 10 76 3.66 4.80
1vlyA02 75.21 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 7 70 3.09 4.40
2w25A02 75.17 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 14 81 3.98 4.88
1ft8E00 75.14 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 44 13 60 2.80 4.64
2pn6A02 75.03 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 7 68 3.22 4.71
1sjrA00 74.61 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 5 62 2.93 4.72
1nzaA00 74.60 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 11 62 2.28 3.67
2ia0B02 74.20 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 14 68 3.33 4.85
1cg2A02 73.05 Pseudomonas sp. RS-16Carboxypeptidase G2 3.30.70.360 110 8 58 2.63 4.52
2nuhA00 71.63 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 7 62 2.80 4.48
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Displaying entries 1 to 77 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1nm2A01
AAVTETGMSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1nm2A01
AAVTETGMSALLGGDPEVSVAHLERLGLTPANVNGAGQIVAAGTMEQLAALNEDKPEGVRKVVPLKVA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"