CATH Domain: 1nkiA00 XML data for domain: 1nkiA00

Molscript image for 1nkiA00
1nkiA00
PDB coordinates for domain 1nkiA00

PDB 1nki, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.180 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
3.10.180.10 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 Gene3D
3.10.180.10.1
3.10.180.10.1.1
3.10.180.10.1.1.1
3.10.180.10.1.1.1.1
3.10.180.10.1.1.1.1.1

[top]
Segment boundaries for domain 1nkiA00

Chopping figure for domain 1nkiA00
DomainStart PDB ResidueStop PDB Residue
1nkiA00 1 134

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.10.180.10.1.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2p7oA00 86.70 Listeria monocytogenes serotype 4b str. F2365Glyoxalase family protein 3.10.180.10 127 28 91 4.20 4.61
3ghjA00 86.43 Uncultured bacteriumPutative integron gene cassette protein 3.10.180.10 114 23 81 2.30 2.83
1f9zA00 85.49 Pyruvate metabolismLactoylglutathione lyase activityNickel ion bindingMethylglyoxal catabolic process to D-lactateLactoylglutathione lyase [EC:4.4.1.5] 3.10.180.10 128 21 83 3.10 3.71
2rk0A01 84.91 Glyoxalase/bleomycin resistance protein/dioxygenaseFrankia sp. EAN1pec 3.10.180.10 119 22 80 2.50 3.10
3ct8A00 84.72 BH2160 proteinBacillus halodurans 3.10.180.10 131 19 84 2.60 3.08
2p25A01 84.52 Glyoxylase I family proteinGlyoxylase family proteinEnterococcus faecalis 3.10.180.10 118 23 78 2.48 3.16
2a4xA00 84.07 3.10.180.10 131 16 85 3.53 4.11
3bqxA00 83.90 Fulvimarina pelagi HTCC2506Putative uncharacterized protein 3.10.180.10 136 19 81 2.54 3.11
3huhA01 83.64 Virulence protein STM3117Salmonella enterica subsp. enterica serovar Typhimurium 3.10.180.10 119 21 77 2.64 3.40
2qqzA01 83.56 Bacillus anthracisGlyoxalase family protein 3.10.180.10 113 19 78 2.41 3.08
2qntA01 83.24 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.10.180.10 109 22 71 2.04 2.85
2rbbA00 82.76 Burkholderia phytofirmans PsJNGlyoxalase/bleomycin resistance protein/dioxygenase 3.10.180.10 126 15 84 3.45 4.09
1ecsA00 82.71 Klebsiella pneumoniaeBleomycin resistance protein 3.10.180.10 120 23 82 3.13 3.81
2i7rA00 81.98 Conserved domain proteinStreptococcus pneumoniae 3.10.180.10 112 18 77 2.92 3.76
2za0B00 80.69 Mus musculusPyruvate metabolismLactoylglutathione lyase [EC:4.4.1.5]Lactoylglutathione lyase 3.10.180.10 176 18 67 3.23 4.78
1qtoA00 79.88 Bleomycin/phleomycin binding proteinStreptomyces verticillus 3.10.180.10 122 18 80 3.08 3.82
1ss4A00 79.80 Glyoxalase family proteinBacillus cereus ATCC 14579 3.10.180.10 143 14 78 3.43 4.38
1u6lA01 75.21 Pseudomonas aeruginosaPhnB proteinPutative uncharacterized protein 3.10.180.10 120 16 73 3.44 4.70
[1]
Displaying entries 1 to 18 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1nkiA00
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPAADYTHYAFGIAAADFARFAAQ
LRAHGVREWKQNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRFA
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1nkiA00
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPAADYTHYAFGIAAADFARFAAQ
LRAHGVREWKQNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRFAD
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:52

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:52

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:15

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"