CATH Domain: 1njkA00 XML data for domain: 1njkA00

Molscript image for 1njkA00
1njkA00
PDB coordinates for domain 1njkA00

PDB 1njk, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.129 Thiol Ester Dehydrase; Chain A
3.10.129.10 Gene3D
3.10.129.10.23
3.10.129.10.23.1
3.10.129.10.23.1.1
3.10.129.10.23.1.1.1
3.10.129.10.23.1.1.1.1

Segment boundaries for domain 1njkA00

Chopping figure for domain 1njkA00
DomainStart PDB ResidueStop PDB Residue
1njkA00 0 132

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.10.129.10.23.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2oiwA00 87.61 Geobacillus kaustophilusHypothetical conserved protein 3.10.129.10 129 16 95 3.09 3.24
2hljA01 85.47 Pseudomonas putida KT2440Putative uncharacterized protein 3.10.129.10 132 15 93 3.35 3.60
2nujA01 85.24 Jannaschia sp. CCS1Thioesterase superfamily 3.10.129.10 145 14 84 2.59 3.05
3b7kA02 85.23 Acetyl-CoA hydrolase [EC:3.1.2.1]Pyruvate metabolismHomo sapiensAcyl-coenzyme A thioesterase 12 3.10.129.10 121 9 83 2.66 3.20
2fs2B00 84.32 Acyl-coenzyme A thioesterase paaIPhenylacetic acid degradation proteinEscherichia coli K-12 3.10.129.10 134 14 76 3.64 4.78
3b7kC02 84.00 Acetyl-CoA hydrolase [EC:3.1.2.1]Pyruvate metabolismHomo sapiensAcyl-coenzyme A thioesterase 12 3.10.129.10 110 10 76 2.52 3.28
1ixlA00 83.61 Putative uncharacterized protein PH1136Pyrococcus horikoshii 3.10.129.10 127 10 77 3.25 4.18
2q2bA00 83.31 Mus musculusCytosolic acyl coenzyme A thioester hydrolaseFatty acid catabolic processPalmitoyl-CoA hydrolase activity 3.10.129.10 141 13 76 3.07 4.01
2essA02 82.80 Bacteroides thetaiotaomicronAcyl-ACP thioesterase 3.10.129.10 94 13 67 2.50 3.69
1zkiA00 82.76 Pseudomonas aeruginosaPhenylacetic acid degradation proteinPutative uncharacterized protein 3.10.129.10 118 10 72 2.54 3.51
2pimA00 82.48 Ralstonia eutropha JMP134Phenylacetic acid degradation-related protein 3.10.129.10 127 13 73 2.86 3.91
3b7kB01 81.98 Acetyl-CoA hydrolase [EC:3.1.2.1]Pyruvate metabolismHomo sapiensAcyl-coenzyme A thioesterase 12 3.10.129.10 140 11 80 3.61 4.47
1c8uA02 81.38 Biosynthesis of unsaturated fatty acidsAcyl-CoA thioesterase II [EC:3.1.2.-]Acyl-CoA thioesterase 2Acyl-CoA thioesterase activityFatty acid catabolic process 3.10.129.10 115 6 74 3.13 4.19
2qwzA01 81.23 Phenylacetic acid degradation-related proteinRuegeria sp. TM1040 3.10.129.10 128 11 76 3.16 4.11
1tbuB00 81.21 Palmitoyl-CoA hydrolase [EC:3.1.2.2]Protein bindingBiosynthesis of unsaturated fatty acidsPeroxisomal acyl-coenzyme A thioester hydrolase 1Peroxisome 3.10.129.10 98 7 67 2.38 3.52
2prxA00 80.81 Shewanella loihica PV-4Thioesterase superfamily protein 3.10.129.10 108 10 68 2.96 4.32
1q6wG00 79.59 Monoamine oxidase regulatory protein, putativeArchaeoglobus fulgidus 3.10.129.10 147 9 70 2.34 3.34
1pn2D02 79.39 Candida tropicalisPeroxisomal hydratase-dehydrogenase-epimerase 3.10.129.10 122 8 67 2.49 3.68
Displaying entries 1 to 18 (page 1 of 1)


Domain ATOM Sequence

>pdb|1njkA00
HQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNG
KSGILSQVITLEPEGQVVADALITFVCIDLKTQKALALEGELREKLEQVK    

Domain COMBS Sequence

>pdb|1njkA00
MGSSHHHHHHSSGRENLYFQGHXQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWXTAHNIAFVVVNINI
NYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADALITFVCIDLKTQKALALEGELREKLEQXVKGH    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"