CATH Domain: 1njgB01 XML data for domain: 1njgB01

Molscript image for 1njgB01
1njgB01
PDB coordinates for domain 1njgB01

PDB 1njg, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.11
1.10.8.60.11.1
1.10.8.60.11.1.1
1.10.8.60.11.1.1.1
1.10.8.60.11.1.1.1.1

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Segment boundaries for domain 1njgB01

Chopping figure for domain 1njgB01
DomainStart PDB ResidueStop PDB Residue
1njgB01 5 11
1njgB01 178 243
1njgB02 13 177

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.10.8.60.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1njgA02 94.01 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 100 90 0.55 0.61
2chgA02 89.43 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 19 89 2.33 2.62
1jr3D03 88.77 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 12 89 2.04 2.29
1sxjE02 88.26 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 18 84 2.19 2.58
1sxjC02 87.37 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 20 89 2.15 2.41
1sxjD02 86.95 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 17 89 2.17 2.44
2z4sA02 85.10 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 15 89 2.83 3.18
1jqjD03 84.79 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 86 13 75 2.00 2.65
1fnnA01 83.02 Pyrobaculum aerophilumCell division control protein 6 (Cdc6), putativeArchaeal cell division control protein 6 1.10.8.60 101 15 72 2.68 3.71
1l8qA02 77.82 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 10 67 2.39 3.56
1j09A04 75.52 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 1.10.8.70 48 10 64 3.07 4.77
1im2A03 75.36 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 12 69 3.37 4.87
2qq8A02 70.23 Homo sapiensTBC1 domain family member 14 1.10.8.270 94 4 53 2.55 4.79
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1njgB01
VLARKWRLDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1njgB01
GAHMGGSMSYQVLARKWRLDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA
MLGT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:21

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"