CATH Domain: 1nh8A03 XML data for domain: 1nh8A03

Molscript image for 1nh8A03
1nh8A03
PDB coordinates for domain 1nh8A03

PDB 1nh8, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.120 Gene3D
3.30.70.120.4
3.30.70.120.4.1
3.30.70.120.4.1.1
3.30.70.120.4.1.1.1
3.30.70.120.4.1.1.1.1

[top]
Segment boundaries for domain 1nh8A03

Chopping figure for domain 1nh8A03
DomainStart PDB ResidueStop PDB Residue
1nh8A01 1 84
1nh8A01 179 211
1nh8A02 91 176
1nh8A03 212 278

Structural Neighbourhood (77 entries)

There are 77 matching structural neighberhood comparisons for CATH ID 3.30.70.120.4.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 77 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vd3A03 93.19 Methanothermobacter thermautotrophicus str. Delta HATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Histidine metabolismMetabolic pathways 3.30.70.120 74 26 90 0.96 1.06
1vi7A02 85.75 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 19 88 2.21 2.49
2nzcA00 85.08 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 8 84 2.44 2.89
2f1fA01 84.62 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 14 83 2.18 2.61
1q5yD00 84.23 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 13 81 2.08 2.56
1eayD00 84.07 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 7 86 2.57 2.96
1gmuA01 83.52 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 14 83 3.08 3.69
2qmwA03 83.45 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 8 87 3.26 3.72
1y7pB01 83.44 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 11 82 2.41 2.92
1darA05 82.62 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.240 87 13 74 2.26 3.02
1vjqA00 82.50 3.30.70.340 71 10 84 2.95 3.49
3e3xA02 82.32 Vibrio parahaemolyticusBipAGTP-binding protein 3.30.70.240 83 11 72 2.66 3.68
1earA02 82.24 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 7 76 2.53 3.29
1lfpA03 81.94 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 4 82 2.80 3.41
1vr6A01 81.85 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 7 81 2.82 3.47
2fgcA03 81.58 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 7 82 3.21 3.89
2qmxA03 81.42 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 14 72 2.90 4.02
2gx8C02 81.40 Bacillus cereus ATCC 14579NIF3-related protein 3.30.70.830 102 8 65 2.09 3.18
1o8bA02 81.14 Pentose phosphate pathwayMetabolic pathwaysRibose 5-phosphate isomerase A [EC:5.3.1.6]Escherichia coli K-12Ribose-5-phosphate isomerase A 3.30.70.260 69 10 89 3.32 3.69
1konA03 81.03 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 13 78 2.77 3.52
1u8sA02 80.96 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 84 11 79 3.33 4.17
1ctfA00 80.88 Ribosome50S ribosomal protein L7/L12Large subunit ribosomal protein L7/L12Cytosolic large ribosomal subunitStructural constituent of ribosome 3.30.1390.10 68 10 85 3.79 4.44
2i0xA01 80.76 Pyrococcus furiosusPutative uncharacterized protein 3.30.70.240 66 13 86 3.20 3.70
1nm2A01 80.75 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 8 86 2.86 3.30
2nyiA01 80.69 3.30.70.260 77 8 80 2.81 3.49
2ivyA01 80.68 Sulfolobus solfataricusPutative uncharacterized protein 3.30.70.240 74 5 81 3.48 4.29
1i1gA02 80.47 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 11 80 2.92 3.63
2w25A02 80.34 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 77 3.05 3.92
1mlaA01 80.31 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 10 78 2.90 3.71
1dtjA00 80.12 RNA-binding protein Nova-2Homo sapiens 3.30.1370.10 74 4 81 3.81 4.70
2x3dF01 79.88 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 11 78 2.86 3.64
1u8sA01 79.85 Glycine cleavage system transcriptional repressor, putativeGlycine cleavage system transcriptional repressorVibrio cholerae 3.30.70.260 86 2 76 2.67 3.48
1utaA00 79.68 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 8 81 3.25 3.97
1nzaA00 79.52 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 10 64 2.16 3.37
2nyiA02 79.46 3.30.70.260 89 7 74 2.79 3.76
2rhsD06 79.34 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 11 70 3.47 4.93
2nuhA00 79.29 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 13 63 2.19 3.45
3cj8B02 79.07 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]Lysine biosynthesisMetabolic pathwaysEnterococcus faecalis 3.30.70.250 66 9 79 3.36 4.25
1jqgA01 78.55 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 13 68 2.60 3.82
1pytA00 78.31 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 10 65 2.77 4.20
1s99A01 78.24 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 4 79 3.11 3.93
1sc6A03 78.17 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.30.70.260 79 10 82 3.15 3.83
2ywwA01 78.00 Pyrimidine metabolismMethanocaldococcus jannaschiiAspartate carbamoyltransferase regulatory subunitAlanine, aspartate and glutamate metabolismAspartate carbamoyltransferase regulatory chain 3.30.70.140 91 8 72 3.28 4.52
1xtzA02 77.84 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 10 71 3.26 4.56
1xmbA02 77.60 Auxin metabolic processArabidopsis thalianaIAA-Ala conjugate hydrolase activityIAA-amino acid hydrolase ILR1-like 2 3.30.70.360 101 7 62 2.69 4.31
1yx2A02 77.49 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 4 70 3.23 4.59
1kr4A00 77.44 Thermotoga maritimaDivalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 107 8 61 2.32 3.76
2do0A01 77.24 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 2 84 3.54 4.20
2rb7A02 77.21 Peptidase, M20/M25/M40 familyDesulfovibrio desulfuricans subsp. desulfuricans str. G20 3.30.70.360 98 7 67 2.85 4.23
1in0A01 77.21 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 10 84 4.15 4.92
1n0uA05 77.20 Positive regulation of translational elongationTranslation elongation factor activityElongation factor 2Elongation factor EF-2 [EC:3.6.5.3]Saccharomyces cerevisiae 3.30.70.240 112 11 57 2.70 4.72
1mw7A03 77.20 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 5 80 3.47 4.34
1vlyA02 77.15 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 7 70 3.01 4.29
1s99A02 77.02 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 10 75 3.67 4.87
1harA02 76.63 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 7 75 3.42 4.54
3bv8A00 76.59 Lysine biosynthesisMetabolic pathways2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferaseTetrahydrodipicolinate N-acetyltransferase [EC:2.3.1.89]2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] 3.30.70.250 84 5 65 2.56 3.91
2pehA01 76.58 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 7 79 3.51 4.41
1kn6A00 76.49 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 5 83 3.48 4.16
1ayeA01 76.31 Carboxypeptidase A2 [EC:3.4.17.15]Homo sapiensMetallocarboxypeptidase activityVacuolar protein catabolic processCarboxypeptidase A2 3.30.70.340 99 13 61 2.81 4.56
1cvjA01 75.99 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 8 80 3.95 4.91
1qm9A02 75.97 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 4 71 3.41 4.74
3c19A01 75.96 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 13 67 2.92 4.34
2airB01 75.81 Pyrimidine metabolismAlanine, aspartate and glutamate metabolismMetabolic pathwaysCytoplasmAspartate carbamoyltransferase regulatory subunit 3.30.70.140 93 14 70 3.38 4.76
1jx4A02 75.80 DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]DNA polymerase IVSulfolobus solfataricus 3.30.70.270 96 11 60 2.33 3.86
2bopA00 75.73 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 5 78 3.60 4.57
1uw4A00 75.67 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 4 73 3.64 4.96
2epiB00 75.50 Methanocaldococcus jannaschiiUPF0045 protein MJ1052 3.30.70.930 96 5 61 2.38 3.87
2pn6A02 75.48 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 10 64 3.07 4.78
1rwuA00 75.22 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 10 74 3.71 4.97
1fxlA02 75.16 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 5 81 4.00 4.89
1r8hA00 75.12 Human papillomavirus type 6aRegulatory protein E2 3.30.70.330 87 4 77 3.81 4.95
1no8A00 74.84 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 4 70 3.51 4.98
1wj9A01 74.82 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 5 73 3.25 4.42
1cvjG02 74.81 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 4 75 3.64 4.85
1l3kA02 73.76 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 78 4 73 3.62 4.95
1fjeB02 72.34 NucleolinMesocricetus auratus 3.30.70.330 84 1 79 3.84 4.81
1sqgA03 71.59 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 6 79 3.67 4.64
[1]
Displaying entries 1 to 77 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1nh8A03
YLMLDYDCPRSALKKATAITPGLESPTIAPLADPDWVAIRALVPRRDVNGIMDELAAIGAKAILASD
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1nh8A03
YLMLDYDCPRSALKKATAITPGLESPTIAPLADPDWVAIRALVPRRDVNGIMDELAAIGAKAILASD
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:21

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"