CATH Domain: 1nd4A02

1nd4A02

PDB 1nd4, Chain A, Domain 2

CATH Code	Level Description	Links
3	Alpha Beta
3.90	Alpha-Beta Complex
3.90.1200	Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2
3.90.1200.10		Gene3D
3.90.1200.10.8
3.90.1200.10.8.1
3.90.1200.10.8.1.1
3.90.1200.10.8.1.1.1
3.90.1200.10.8.1.1.1.1

Structure
Sequence
History

[top]
Segment boundaries for domain 1nd4A02

Domain	Start PDB Residue	Stop PDB Residue
1nd4A01	10	95
1nd4A02	96	264

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.

[top]
Domain ATOM Sequence

>pdb|1nd4A02
EVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK
ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIA
FYRLLDEFF

BLAST against CATH

[top]
Domain COMBS Sequence

>pdb|1nd4A02
EVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLK
ARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIA
FYRLLDEFF

BLAST against CATH

[top]
Domain History Events (11)

Domain assigned by auto on 20 Oct 2008 14:21

Assigning to "3.90.1200.10" based on similarity with "1nd4B02"