CATH Domain: 1ncxA01 XML data for domain: 1ncxA01

Molscript image for 1ncxA01
1ncxA01
PDB coordinates for domain 1ncxA01

PDB 1ncx, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.12
1.10.238.10.12.1
1.10.238.10.12.1.1
1.10.238.10.12.1.1.1
1.10.238.10.12.1.1.1.1

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Segment boundaries for domain 1ncxA01

Chopping figure for domain 1ncxA01
DomainStart PDB ResidueStop PDB Residue
1ncxA01 1 90
1ncxA02 91 162

Structural Neighbourhood (19 entries)

There are 19 matching structural neighberhood comparisons for CATH ID 1.10.238.10.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 19 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2bl0B01 87.33 Physarum polycephalumMyosin regulatory light chain 1.10.238.10 68 29 75 2.16 2.86
1wdcC01 85.77 Myosin essential light chain, striated adductor muscleArgopecten irradians 1.10.238.10 78 30 84 3.23 3.83
1m45A01 84.01 Vesicle targetingIdentical protein bindingProtein localizationMyosin II heavy chain bindingMyosin light chain 1 1.10.238.10 67 26 74 2.51 3.37
1a4pA00 83.51 Protein S100-A10Homo sapiens 1.10.238.10 92 14 84 3.55 4.19
1k90E01 83.26 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 67 82 2.49 3.03
1wrkA00 83.12 Cardiac muscle contractionCalcium signaling pathwayDilated cardiomyopathyHypertrophic cardiomyopathy (HCM)Calcium ion binding 1.10.238.10 82 65 90 4.11 4.57
1fi6A00 82.09 Mus musculusRalBP1-associated Eps domain-containing protein 1Protein binding 1.10.238.10 92 15 83 3.22 3.85
1xk4E00 81.92 Protein S100-A8Calcium ion bindingHomo sapiensInflammatory responseProtein binding 1.10.238.10 89 12 88 4.12 4.63
1s26D01 81.91 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 69 65 1.56 2.38
1eg3A04 81.45 Cell surfaceCostamereCytoskeletonDystrophin-associated glycoprotein complexActin binding 1.10.238.10 82 10 76 3.07 4.00
1jfjA01 80.98 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 26 70 2.70 3.86
1qx2A00 80.96 Protein S100-GBos taurus 1.10.238.10 75 41 78 3.37 4.27
1uurA03 80.47 Protein homodimerization activityNucleusSignal transducer and activator of transcription APositive regulation of transcriptionCytosol 1.10.238.10 88 10 81 3.45 4.25
1c07A00 80.31 Plasma membraneClathrin coat assemblyEpidermal growth factor receptor substrate 15Homo sapiensEpidermal growth factor receptor signaling pathway 1.10.238.10 95 13 82 2.96 3.61
1g33A00 80.10 Rattus norvegicusParvalbumin alpha 1.10.238.10 73 24 77 3.69 4.74
1qjtA00 79.62 Mus musculusEpidermal growth factor receptor substrate 15 1.10.238.10 99 13 79 3.17 3.97
1tizA00 79.36 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 27 73 2.87 3.91
1qasA01 79.21 Calcium ion bindingPhosphatidylinositol signaling systemCalcium signaling pathwayRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 88 13 84 4.16 4.93
1djxB01 75.82 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 17 57 2.08 3.60
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Displaying entries 1 to 19 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ncxA01
ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV
MMVRQMKEDA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ncxA01
ASMTDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV
MMVRQMKEDA
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1ncx001" to "1ncxA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:05

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:05

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:20

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"