CATH Domain: 1narA00 XML data for domain: 1narA00

Molscript image for 1narA00
1narA00
PDB coordinates for domain 1narA00

PDB 1nar, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.63
3.20.20.80.63.1
3.20.20.80.63.1.1
3.20.20.80.63.1.1.1
3.20.20.80.63.1.1.1.1

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Segment boundaries for domain 1narA00

Chopping figure for domain 1narA00
DomainStart PDB ResidueStop PDB Residue
1narA00 1 289

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.20.20.80.63.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ta3A00 78.96 Triticum aestivumXylanase inhibitor protein 1 3.20.20.80 274 11 86 3.58 4.16
3fndA01 77.15 ChitinaseBacteroides thetaiotaomicron 3.20.20.80 261 12 83 3.38 4.04
1eokA00 75.51 Endo-beta-N-acetylglucosaminidase F3Elizabethkingia meningoseptica 3.20.20.80 282 10 79 3.53 4.45
1edtA00 75.03 Endo-beta-N-acetylglucosaminidase HStreptomyces plicatus 3.20.20.80 265 12 84 4.09 4.86
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1narA00
PKPIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKV
VISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIRSDEPFATLMGQLITELKKDDDLNIN
VVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTKHNKITRD
IFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLAA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1narA00
PKPIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKV
VISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIRSDEPFATLMGQLITELKKDDDLNIN
VVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDPLDTKHNKITRD
IFIGGCTRLVQTFSLPGVFFWNANDSVIPKRDGDKPFIVELTLQQLLAAR
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1nar000" to "1narA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"