CATH Domain: 1na3A00 XML data for domain: 1na3A00

Molscript image for 1na3A00
1na3A00
PDB coordinates for domain 1na3A00

PDB 1na3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.10 Gene3D
1.25.40.10.15
1.25.40.10.15.1
1.25.40.10.15.1.1
1.25.40.10.15.1.1.1
1.25.40.10.15.1.1.1.1

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Segment boundaries for domain 1na3A00

Chopping figure for domain 1na3A00
DomainStart PDB ResidueStop PDB Residue
1na3A00 1 86

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.25.40.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2v5fA00 91.54 Prolyl 4-hydroxylase subunit alpha-1Homo sapiensProcollagen-proline 4-dioxygenase activityMitochondrion 1.25.40.10 97 30 88 1.87 2.11
2r5sA01 88.02 Vibrio parahaemolyticusPutative uncharacterized protein VP0806Putative thioredoxin 1.25.40.10 82 10 94 2.19 2.33
3beeA00 87.93 Vibrio parahaemolyticusPutaive YfrE protein 1.25.40.10 90 19 93 2.58 2.76
1oxjA02 79.45 Cytoplasmic mRNA processing bodyNuclear-transcribed mRNA poly(A) tail shorteningEstablishment of RNA localizationProtein SmaugDrosophila melanogaster 1.25.40.170 109 6 75 3.67 4.88
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1na3A00
GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN
AKQKQG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1na3A00
GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK
QNLGNAKQKQG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:44

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"