CATH Domain: 1n9rB00 XML data for domain: 1n9rB00

Molscript image for 1n9rB00
1n9rB00
PDB coordinates for domain 1n9rB00

PDB 1n9r, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.11
2.30.30.100.11.1
2.30.30.100.11.1.1
2.30.30.100.11.1.1.1
2.30.30.100.11.1.1.1.1

[top]
Segment boundaries for domain 1n9rB00

Chopping figure for domain 1n9rB00
DomainStart PDB ResidueStop PDB Residue
1n9rB00 18 86

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.30.30.100.11.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1b34A00 87.48 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 26 85 2.32 2.73
3bw1A00 86.22 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 28 79 2.70 3.41
1ib8A02 83.91 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 17 86 2.66 3.06
3by7E00 83.16 2.30.30.100 74 13 77 2.06 2.67
1biaA03 81.70 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 17 68 2.61 3.83
2k57A00 80.87 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 9 76 3.10 4.04
1nvpD02 80.18 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 17 62 2.11 3.39
1nh2D02 79.97 Transcription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein bindingBasal transcription factorsTranscription initiation factor IIA small subunit 2.30.18.10 48 12 65 2.72 4.17
1mhnA00 79.04 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 8 82 4.08 4.94
1v76B00 75.31 Pyrococcus horikoshiiRibonuclease P protein component 1Ribonuclease P subunit P29 [EC:3.1.26.5] 2.30.30.210 91 7 60 3.01 4.98
1sf9A02 75.11 Bacillus subtilisUncharacterized protein yfhH 2.30.30.340 54 3 76 3.79 4.93
[1]
Displaying entries 1 to 11 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1n9rB00
FLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELPN
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1n9rB00
FLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELPN
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"