CATH Domain: 1n7sD00 XML data for domain: 1n7sD00

Molscript image for 1n7sD00
1n7sD00
PDB coordinates for domain 1n7sD00

PDB 1n7s, Chain D, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.1
1.20.5.110.1.1
1.20.5.110.1.1.1
1.20.5.110.1.1.1.1
1.20.5.110.1.1.1.1.1

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Segment boundaries for domain 1n7sD00

Chopping figure for domain 1n7sD00
DomainStart PDB ResidueStop PDB Residue
1n7sD00 139 204

Structural Neighbourhood (74 entries)

There are 74 matching structural neighberhood comparisons for CATH ID 1.20.5.110.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 74 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n7sA00 90.33 SNARE interactions in vesicular transportVasopressin-regulated water reabsorptionRattus norvegicusProtein complex bindingVesicle-mediated transport 1.20.5.110 63 9 90 0.99 1.09
1gl2A00 89.77 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 16 80 0.89 1.11
1gl2D00 89.46 Syntaxin-8Rattus norvegicusProtein bindingSyntaxin 8SNARE interactions in vesicular transport 1.20.5.110 54 29 81 1.19 1.45
1uixA00 88.92 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 6 97 2.41 2.48
1svfC00 88.13 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 8 93 2.79 2.97
3b5nJ00 88.04 Cellular membrane fusionSNARE complexPhosphatidylinositol-3,5-bisphosphate bindingSyntaxin 1B/2/3Prospore membrane 1.20.5.110 64 7 86 1.93 2.23
3e7kA00 86.70 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 9 75 1.69 2.23
2w83C00 86.21 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 4 85 1.86 2.19
1jcdB00 86.20 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 13 69 2.19 3.14
1l2pA00 85.39 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 11 87 3.19 3.63
1gu4A00 84.14 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 86 3.94 4.56
1gk4C00 84.10 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 9 85 4.19 4.89
1ybkA00 83.73 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 7 71 1.83 2.57
1urqC00 83.59 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 68 7 80 2.46 3.04
1ic2B00 83.38 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 4 63 1.45 2.28
1l4aA00 83.30 SynaptobrevinLoligo pealei 1.20.5.110 66 4 95 4.42 4.63
3efgA00 83.17 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 10 74 2.10 2.83
1kilE00 82.83 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 7 62 1.46 2.35
1n2dC00 82.51 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 10 69 2.34 3.36
1jocA01 81.97 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 5 78 3.52 4.47
2b9bA04 81.87 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 3 57 1.64 2.85
3kpeA00 80.96 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 6 71 3.32 4.66
1no4C00 80.90 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 4 63 1.70 2.70
1junA00 80.39 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 9 65 2.14 3.28
1a02F00 80.23 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 5 71 3.26 4.58
1gl2B00 80.21 Mus musculusSyntaxin-7 1.20.5.110 59 8 68 2.49 3.65
2rklB00 79.88 Multivesicular bodyVacuolar protein sorting-associated protein VTA1Membrane fractionProtein bindingEndocytosis 1.20.5.420 50 0 46 1.17 2.49
1aa0A00 79.66 Enterobacteria phage T4Fibritin 1.20.5.320 113 10 58 1.86 3.18
1dp5B00 79.51 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 9 46 0.68 1.45
1n7sB00 79.45 Protein domain specific bindingActomyosinMyosin head/neck bindingRattus norvegicusProtein binding, bridging 1.20.5.110 68 6 61 2.58 4.18
2p7jB01 79.35 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 5 48 1.29 2.66
1ik7A00 79.34 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 1 56 1.59 2.84
1gk6B00 79.19 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 1 51 1.26 2.45
2wpqA00 79.07 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 9 66 2.76 4.14
1hf9A00 78.79 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 7 62 2.27 3.65
1ifpA00 78.68 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 4 66 2.67 4.00
2spcA00 78.30 Oocyte constructionSpectrosome organizationPlasma membrane organizationNegative regulation of microtubule depolymerizationGermarium-derived female germ-line cyst formation 1.20.58.60 107 3 57 2.53 4.37
1u57A00 77.95 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 12 68 2.90 4.25
1jekA00 77.94 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 45 1.11 2.44
1xrdA01 77.90 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 0 63 2.81 4.42
1kv4A00 77.72 Moricin-1Bombyx mori 1.20.5.750 42 9 63 2.93 4.60
3hd7B00 77.52 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 12 67 3.32 4.93
1nhlA00 77.45 Vesicle targetingAzurophil granuleCellular membrane fusionSynaptosomal-associated protein 23Protein binding 1.20.5.110 52 1 50 1.45 2.90
3b5nA00 77.39 Synaptobrevin homolog 1Vesicle fusionSNAP receptor activityPlasma membraneVesicle-associated membrane protein 4 1.20.5.110 61 1 53 2.08 3.92
1s5lX00 77.01 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 10 60 2.58 4.26
1piqA00 77.00 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 0 46 1.27 2.70
2k1aA00 76.84 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 7 53 2.00 3.77
1mg1A03 76.77 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 7 52 2.40 4.58
2p2uA01 76.45 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 1 57 2.75 4.74
1m7lA00 76.16 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 12 60 2.96 4.88
1ytzT00 75.82 Troponin T, fast skeletal muscle isoformsGallus gallus 1.20.5.350 90 6 55 2.37 4.27
2gr7A00 75.75 Haemophilus influenzaeAdhesin 3.30.1300.30 101 1 46 1.57 3.37
1vf5C03 75.14 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 48 1.66 3.42
2hr3A01 74.09 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 6 42 1.51 3.56
2qjyC01 73.87 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 46 1.93 4.11
2r44A01 73.68 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 39 0.85 2.16
1ci6A00 72.84 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 7 37 1.16 3.06
1fdoA05 72.47 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 11 40 1.69 4.13
1vl2B03 72.13 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 3 45 2.19 4.82
1omiA02 71.91 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 7 36 1.11 3.05
1vl2A03 71.87 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 32 3 45 2.19 4.82
2oarE02 70.66 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 4 33 1.57 4.71
1be3K00 70.14 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 4 33 1.02 3.06
1a2xB00 70.00 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 3 33 1.18 3.54
1mqsB00 69.89 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 7 39 1.49 3.78
1nafA01 69.78 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 36 0 33 1.59 4.77
1ozhA03 69.34 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 0 36 1.72 4.73
2pp6A01 66.95 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 31 1.41 4.43
2oarA02 66.31 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 25 0.51 1.98
2p10B02 66.27 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 15 28 1.02 3.54
3c8vA04 64.74 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 5 28 1.14 3.96
1d66B02 61.60 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 22 0.36 1.58
2qiwA02 60.75 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 0 27 1.35 4.95
1mkmA02 57.55 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 21 0.74 3.49
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Displaying entries 1 to 74 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1n7sD00
GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1n7sD00
GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"