CATH Domain: 1n62A01 XML data for domain: 1n62A01

Molscript image for 1n62A01
1n62A01
PDB coordinates for domain 1n62A01

PDB 1n62, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.3
3.10.20.30.3.1
3.10.20.30.3.1.1
3.10.20.30.3.1.1.1
3.10.20.30.3.1.1.1.1

[top]
Segment boundaries for domain 1n62A01

Chopping figure for domain 1n62A01
DomainStart PDB ResidueStop PDB Residue
1n62A01 3 79
1n62A02 80 161

Structural Neighbourhood (31 entries)

There are 31 matching structural neighberhood comparisons for CATH ID 3.10.20.30.3.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 31 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1vlbA01 93.36 Desulfovibrio gigasAldehyde oxidoreductase 3.10.20.30 74 36 94 1.03 1.09
3etrA01 90.91 Bos taurusXanthine dehydrogenase/oxidase 3.10.20.30 85 28 87 1.41 1.62
1zud400 81.90 Sulfur carrier protein ThiSThiamine biosynthesis ThiSEscherichia coli K-12 3.10.20.30 66 7 76 3.03 3.95
1ryjA00 80.07 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 3.10.20.30 70 12 79 3.26 4.12
3cwiA00 79.88 Thiamine biosynthesis ThiSGeobacter metallireducens GS-15ThiS, thiamine-biosynthesis 3.10.20.30 67 16 77 3.02 3.88
1l5pA00 79.85 FerredoxinTrichomonas vaginalis 3.10.20.30 93 14 76 2.99 3.92
1tygB00 79.68 Sulfur carrier protein ThiSThiamine biosynthesis ThiSBacillus subtilis 3.10.20.30 65 10 76 3.07 4.01
1krhA01 78.98 Benzoate 1,2-dioxygenase electron transfer componentAcinetobacter sp. ADP1 3.10.20.30 103 12 69 2.83 4.05
1xlqA00 78.95 PutidaredoxinPseudomonas putida 3.10.20.30 106 14 68 2.80 4.07
2piaA03 78.70 Burkholderia cepaciaPhthalate dioxygenase reductase 3.10.20.30 96 10 73 3.10 4.19
1c1yB00 78.66 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 6 83 3.35 4.03
2bs2B01 78.52 Benzoate degradation via CoA ligationButanoate metabolismOxidative phosphorylationTwo-component systemCitrate cycle (TCA cycle) 3.10.20.30 106 9 72 2.59 3.57
1wxmA01 78.42 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 7 85 3.63 4.24
1tkeA01 78.18 Aminoacyl-tRNA biosynthesisThreonyl-tRNA synthetaseZinc ion bindingThreonyl-tRNA synthetase [EC:6.1.1.3]RNA binding 3.10.20.30 64 12 75 3.19 4.24
2bwfA00 78.11 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 11 85 3.74 4.36
1i7hC00 78.02 2Fe-2S ferredoxinFerredoxin, 2Fe-2SProtein bindingEscherichia coli K-12 3.10.20.30 108 9 65 3.11 4.73
2zeqA00 78.00 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 11 82 3.55 4.33
2fazA00 77.92 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 9 81 3.41 4.17
2kd0A01 77.50 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 11 77 3.09 3.97
1yqbA01 77.37 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 12 83 3.59 4.32
2h88B01 77.26 Citrate cycle (TCA cycle)Oxidative phosphorylationSuccinate dehydrogenase (ubiquinone) iron-sulfur protein [EC:1.3.5.1]Gallus gallusMetabolic pathways 3.10.20.30 107 12 71 3.45 4.79
1z2mA02 77.22 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 5 83 3.64 4.38
1oqyA01 77.14 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 9 87 3.76 4.30
1wywB00 76.92 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 6 84 4.06 4.79
2bt6B00 76.59 Bos taurusProtein homodimerization activitySteroid biosynthetic processProtein C-terminus bindingAdrenodoxin, mitochondrial 3.10.20.30 104 11 70 3.05 4.35
1wx9A00 76.58 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 7 76 3.12 4.07
1z2mA01 76.32 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 9 79 3.74 4.72
1wh3A01 76.12 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 2 81 3.61 4.41
1h4rA01 75.96 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 5 79 3.54 4.45
2he7A01 74.12 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 6 83 3.83 4.57
2c60A01 73.44 Neurotrophin signaling pathwayMitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 6 76 3.75 4.89
[1]
Displaying entries 1 to 31 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1n62A01
KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1n62A01
MAKAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEG
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:19

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"