CATH Domain: 1n55A00 XML data for domain: 1n55A00

Molscript image for 1n55A00
1n55A00
PDB coordinates for domain 1n55A00

PDB 1n55, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.70 Aldolase class I Gene3D
3.20.20.70.1
3.20.20.70.1.1
3.20.20.70.1.1.1
3.20.20.70.1.1.1.1
3.20.20.70.1.1.1.1.2

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Segment boundaries for domain 1n55A00

Chopping figure for domain 1n55A00
DomainStart PDB ResidueStop PDB Residue
1n55A00 2 250

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.20.20.70.1.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3gvgA00 90.58 Glycolysis / GluconeogenesisFructose and mannose metabolismMetabolic pathwaysInositol phosphate metabolismTriosephosphate isomerase (TIM) [EC:5.3.1.1] 3.20.20.70 247 39 96 1.83 1.89
1w0mA00 83.59 Thermoproteus tenaxTriosephosphate isomerase 3.20.20.70 225 23 84 2.59 3.06
1nvmA01 76.02 Pseudomonas sp. CF6004-hydroxy-2-oxovalerate aldolase 3.20.20.70 270 6 75 3.75 4.99
3f4wA00 75.98 Pentose and glucuronate interconversionsMethane metabolismPutative hexulose 6 phosphate synthaseSalmonella enterica subsp. enterica serovar Typhimurium3-hexulose-6-phosphate synthase [EC:4.1.2.43] 3.20.20.70 211 10 75 3.30 4.37
2nwrA00 75.71 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]2-dehydro-3-deoxyphosphooctonate aldolaseMetabolic pathwaysLipopolysaccharide biosynthesisAquifex aeolicus 3.20.20.70 257 9 77 3.59 4.66
1thfD00 75.69 Thermotoga maritimaCyclase HisF [EC:4.1.3.-]Imidazole glycerol phosphate synthase subunit hisFHistidine metabolismMetabolic pathways 3.20.20.70 253 9 78 3.22 4.11
1m5wA00 75.56 Vitamin B6 metabolismMetabolic pathwaysPyridoxine 5-phosphate synthase [EC:2.6.99.2]Pyridoxine 5'-phosphate synthasePyridoxine biosynthetic process 3.20.20.70 242 9 78 3.93 4.99
1wa3D00 75.25 Thermotoga maritimaArginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolism 3.20.20.70 203 10 73 3.48 4.74
2yw3E00 75.03 Arginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysThermus thermophilus HB8 3.20.20.70 198 10 72 3.60 4.98
1nsjA00 74.65 Thermotoga maritimaN-(5'-phosphoribosyl)anthranilate isomerasePhenylalanine, tyrosine and tryptophan biosynthesisPhosphoribosylanthranilate isomerase [EC:5.3.1.24]Metabolic pathways 3.20.20.70 205 8 73 3.35 4.58
2zdrA01 74.47 Amino sugar and nucleotide sugar metabolismMetabolic pathwaysN-acetylneuraminate synthase [EC:2.5.1.56]Capsule biosynthesis proteinNeisseria meningitidis 3.20.20.70 269 7 71 3.26 4.57
1q6oB00 73.73 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 11 75 3.68 4.90
1vhnA01 73.44 Thermotoga maritimaPutative uncharacterized protein 3.20.20.70 231 9 76 3.81 4.97
1piiA02 73.30 Phenylalanine, tyrosine and tryptophan biosynthesisTryptophan biosynthesis protein trpCFIndole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]Phosphoribosylanthranilate isomerase activityIndole-3-glycerol-phosphate synthase activity 3.20.20.70 190 5 67 3.25 4.82
1vkfA00 72.67 Thermotoga maritimaGlycerol uptake operon antiterminatorGlycerol uptake operon antiterminator-related protein 3.20.20.400 168 13 62 2.99 4.80
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1n55A00
AKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAIAKSGAFTGEVSMP
ILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQ
VVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE
FRDIIDATR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1n55A00
MSAKPQPIAAANWKCNGTTASIEKLVQVFNEHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAQNAIAKSGAFTGEVS
MPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAW
NQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK
PEFRDIIDATR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:18

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"