CATH Domain: 1n3lA01 XML data for domain: 1n3lA01

Molscript image for 1n3lA01
1n3lA01
PDB coordinates for domain 1n3lA01

PDB 1n3l, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.1
3.40.50.620.1.1
3.40.50.620.1.1.1
3.40.50.620.1.1.1.1
3.40.50.620.1.1.1.1.1

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Segment boundaries for domain 1n3lA01

Chopping figure for domain 1n3lA01
DomainStart PDB ResidueStop PDB Residue
1n3lA01 5 213
1n3lA02 217 342

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.620.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2zp1A01 89.58 Aminoacyl-tRNA biosynthesisMethanocaldococcus jannaschiiTyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1] 3.40.50.620 196 33 92 1.93 2.08
2cyaA01 89.15 Aeropyrum pernixTyrosyl-tRNA synthetase 3.40.50.620 205 30 96 2.70 2.81
1h3fB01 85.63 Aminoacyl-tRNA biosynthesisThermus thermophilus HB27Tyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1] 3.40.50.620 203 25 92 2.67 2.88
1wq4A01 82.12 Aminoacyl-tRNA biosynthesisMembraneTyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1]Escherichia coli K-12 3.40.50.620 226 16 88 3.49 3.92
2ip1A01 79.89 Tryptophan-tRNA ligase activityProtein bindingTryptophanyl-tRNA synthetase, cytoplasmicAminoacyl-tRNA biosynthesisCytoplasm 3.40.50.620 242 11 80 3.08 3.84
3focA01 76.04 Aminoacyl-tRNA biosynthesisTryptophanyl-tRNA synthetase [EC:6.1.1.2]Giardia lamblia ATCC 50803Tryptophanyl-tRNA synthetaseTryptophan metabolism 3.40.50.620 285 14 68 3.02 4.41
1qtqA05 75.02 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 6 57 2.29 3.96
1j09A01 74.22 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 13 55 2.75 4.91
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1n3lA01
PSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMK
APWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGL
LYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1n3lA01
PSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMK
APWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGL
LYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNP
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 17:18

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"