CATH Domain: 1n1tA02 XML data for domain: 1n1tA02

Molscript image for 1n1tA02
1n1tA02
PDB coordinates for domain 1n1tA02

PDB 1n1t, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.200 Gene3D
2.60.120.200.9
2.60.120.200.9.1
2.60.120.200.9.1.1
2.60.120.200.9.1.1.1
2.60.120.200.9.1.1.1.1

[top]
Segment boundaries for domain 1n1tA02

Chopping figure for domain 1n1tA02
DomainStart PDB ResidueStop PDB Residue
1n1tA01 1 386
1n1tA02 417 618

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.60.120.200.9.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1w0pA01 77.54 Vibrio choleraeSialidase precursor 2.60.120.200 177 6 74 2.99 4.00
1a8dA01 77.36 TentoxilysinTetanus toxin precursorClostridium tetani 2.60.120.200 246 8 77 3.61 4.67
1sacA00 76.79 Whole blood and lymphApoptosis (type I programmed cell death)Acute-phase responseProtein folding and stabilizationConnective tissue 2.60.120.200 204 8 76 3.53 4.62
1bkzA00 74.04 CytoplasmEpitheliumStructural cell of tissue (fibroblast, osteoblast, etc.)Sugar bindingRegulation by binding / dissociation 2.60.120.200 135 8 62 3.10 4.97
[1]
Displaying entries 1 to 4 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1n1tA02
AVPTAGLVGFLSHSANGSVWEDVYRCVDANVANAERVPNGLKFNGVGGGAVWPVARQGQTRRYQFANYRFTLVATVTIDE
LPKGTSPLLGAGLEGPGDAKLLGLSYDKNRQWRPLYGAAPASPTGSWELHKKYHVVLTMADRQGSVYVDGQPLAGSGNTV
VRGATLPDISHFYIGGPRSKGAPTDSRVTVTNVVLYNRRLNS
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1n1tA02
AVPTAGLVGFLSHSANGSVWEDVYRCVDANVANAERVPNGLKFNGVGGGAVWPVARQGQTRRYQFANYRFTLVATVTIDE
LPKGTSPLLGAGLEGPGDAKLLGLSYDKNRQWRPLYGAAPASPTGSWELHKKYHVVLTMADRQGSVYVDGQPLAGSGNTV
VRGATLPDISHFYIGGPRSKGAPTDSRVTVTNVVLYNRRLNS
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:17

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"