CATH Domain: 1n1jB00 XML data for domain: 1n1jB00

Molscript image for 1n1jB00
1n1jB00
PDB coordinates for domain 1n1jB00

PDB 1n1j, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.7
1.10.20.10.7.1
1.10.20.10.7.1.1
1.10.20.10.7.1.1.1
1.10.20.10.7.1.1.1.1

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Segment boundaries for domain 1n1jB00

Chopping figure for domain 1n1jB00
DomainStart PDB ResidueStop PDB Residue
1n1jB00 43 120

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.10.20.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jfiA00 88.07 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 31 78 1.04 1.33
2hueB00 87.15 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 75 12 88 1.70 1.92
1b67A00 85.78 Methanothermus fervidusDNA-binding protein HMf-1 1.10.20.10 68 26 84 1.57 1.86
1tafB00 85.71 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 20 80 1.43 1.77
1bh9B00 84.60 Protein N-terminus bindingThyroid hormone receptor bindingTranscription coactivator activityBasal transcription factorsPositive regulation by host of viral transcription 1.10.20.10 89 16 77 1.64 2.12
1tafA00 84.35 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 11 80 2.61 3.23
1eqzH00 84.22 Systemic lupus erythematosusGallus gallusHistone H4Histone H4 1.10.20.10 95 17 77 2.00 2.57
1h3oB00 83.86 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 12 83 2.42 2.90
1kx5D00 78.84 Histone H2BXenopus laevisHistone H2B 1.1 1.10.20.10 122 15 63 2.59 4.05
1jfiB00 77.14 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 19 57 2.25 3.94
1h3oA00 76.98 General RNA polymerase II transcription factor activityTranscription coactivator activityBasal transcription factorsTranscription factor TFIID complexCytoplasm 1.10.20.10 48 10 56 2.06 3.65
1kx5A00 76.23 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 135 12 51 2.40 4.63
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1n1jB00
LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1n1jB00
LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"