CATH Domain: 1n1jA00 XML data for domain: 1n1jA00

Molscript image for 1n1jA00
1n1jA00
PDB coordinates for domain 1n1jA00

PDB 1n1j, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.2
1.10.20.10.2.1
1.10.20.10.2.1.1
1.10.20.10.2.1.1.1
1.10.20.10.2.1.1.1.1

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Segment boundaries for domain 1n1jA00

Chopping figure for domain 1n1jA00
DomainStart PDB ResidueStop PDB Residue
1n1jA00 55 141

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 1.10.20.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2hueB00 88.55 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 75 16 81 1.63 2.00
1bh9B00 88.54 Protein N-terminus bindingThyroid hormone receptor bindingTranscription coactivator activityBasal transcription factorsPositive regulation by host of viral transcription 1.10.20.10 89 10 83 3.30 3.97
1tzyF00 88.37 Histone H2BGallus gallusHistone H2B 1/2/3/4/6Protein binding 1.10.20.10 93 21 92 1.57 1.70
1b67A00 88.18 Methanothermus fervidusDNA-binding protein HMf-1 1.10.20.10 68 35 78 1.27 1.62
1tafA00 87.07 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 14 77 1.68 2.18
1n1jB00 86.92 Nuclear transcription factor Y subunit gammaSequence-specific DNA binding transcription factor activityRegulation of transcription from RNA polymerase II promoterHomo sapiensRNA polymerase II transcription factor activity 1.10.20.10 78 25 88 2.37 2.68
1h3oB00 86.76 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 12 81 1.58 1.94
1tafB00 85.95 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 18 74 1.57 2.10
1eqzH00 85.57 Systemic lupus erythematosusGallus gallusHistone H4Histone H4 1.10.20.10 95 13 80 1.98 2.48
1jfiA00 85.36 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 15 72 1.77 2.44
1kx5B00 84.37 Systemic lupus erythematosusXenopus laevisHistone H4Histone H4 1.10.20.10 102 13 74 1.99 2.67
1jfiB00 84.12 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 36 63 1.17 1.84
1kx5D00 83.58 Histone H2BXenopus laevisHistone H2B 1.1 1.10.20.10 122 21 70 1.68 2.38
1bh9A00 79.40 Basal transcription factorsTranscription factor TFIID complexTranscription initiation factor TFIID subunit D11Protein C-terminus bindingTranscription initiation factor TFIID subunit 13 1.10.20.10 45 17 51 1.71 3.31
1h3oA00 78.75 General RNA polymerase II transcription factor activityTranscription coactivator activityBasal transcription factorsTranscription factor TFIID complexCytoplasm 1.10.20.10 48 14 52 2.02 3.82
1kx5A00 78.26 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 135 14 54 1.86 3.44
1f1eA00 77.10 Methanopyrus kandleriHistone H3/H4 1.10.20.10 147 19 49 1.78 3.58
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1n1jA00
IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKL
YLQKFRE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1n1jA00
SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY
VEPLKLYLQKFRE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"