CATH Domain: 1n0qB00 XML data for domain: 1n0qB00

Molscript image for 1n0qB00
1n0qB00
PDB coordinates for domain 1n0qB00

PDB 1n0q, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.20 Gene3D
1.25.40.20.7
1.25.40.20.7.1
1.25.40.20.7.1.1
1.25.40.20.7.1.1.1
1.25.40.20.7.1.1.1.1

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Segment boundaries for domain 1n0qB00

Chopping figure for domain 1n0qB00
DomainStart PDB ResidueStop PDB Residue
1n0qB00 1 93

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.25.40.20.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ehrA02 90.38 Osteoclast-stimulating factor 1OssificationIdentical protein bindingHomo sapiensSignal transduction 1.25.40.20 114 37 78 0.95 1.22
3c5rA00 89.97 BRCA1-associated RING domain protein 1Protein homodimerization activityRNA bindingBRCA1-A complexNegative regulation of apoptosis 1.25.40.20 125 49 74 1.06 1.42
1ympA00 88.13 Negative regulation of gene-specific transcriptionNeural tube developmentNeurogenic locus notch homolog protein 1Regulation of somitogenesisRegulation of epithelial cell proliferation involved in prostate gland development 1.25.40.20 131 39 70 1.12 1.58
1ycsB01 86.76 Induction of apoptosisNF-kappaB bindingNegative regulation of cell cycleHomo sapiensApoptosis-stimulating of p53 protein 2 1.25.40.20 128 35 71 1.82 2.53
1bi7B00 86.19 Bladder cancerSenescencePathways in cancerNon-small cell lung cancerProtein binding 1.25.40.20 125 36 72 1.52 2.11
1s70B01 83.06 Focal adhesionGallus gallusProtein phosphatase 1 regulatory subunit 12ARegulation of actin cytoskeletonProtein phosphatase 1 regulatory subunit 12A 1.25.40.20 162 37 57 2.04 3.55
1uohA00 79.31 26S proteasome non-ATPase regulatory subunit 10CytoplasmProteasome regulatory particleActin cytoskeletonHomo sapiens 1.25.40.20 223 44 41 1.04 2.49
2dznA00 77.78 26S proteasome non-ATPase regulatory subunit 10Proteasome regulatory particle assemblyProbable 26S proteasome regulatory subunit p28NucleusSaccharomyces cerevisiae 1.25.40.20 226 44 41 0.96 2.33
1iknD00 77.48 Cytoplasmic sequestering of NF-kappaBNeurotrophin signaling pathwayT cell receptor signaling pathwayApoptosisAdipocytokine signaling pathway 1.25.40.20 215 47 43 1.53 3.54
1k1aA00 76.99 Transcription factor bindingBcl3/NF-kappaB2 complexNegative regulation of apoptosisCytoplasmI-kappaB kinase/NF-kappaB cascade 1.25.40.20 228 45 40 1.61 3.95
1wdyA00 73.88 2-5A-dependent ribonucleaseRibonuclease L [EC:3.1.26.-]Homo sapiens 1.25.40.20 285 43 32 1.29 3.95
1n11A00 67.75 Structural constituent of cytoskeletonMaintenance of epithelial cell apical/basal polarityEnzyme bindingHomo sapiensAnkyrin-1 1.25.40.20 404 56 23 0.68 2.95
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1n0qB00
NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH
LEVVKLLLEAGAY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1n0qB00
NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH
LEVVKLLLEAGAY
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:44

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"