CATH Domain: 1my5A00 XML data for domain: 1my5A00

Molscript image for 1my5A00
1my5A00
PDB coordinates for domain 1my5A00

PDB 1my5, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.10 Immunoglobulins Gene3D
2.60.40.10.46
2.60.40.10.46.1
2.60.40.10.46.1.1
2.60.40.10.46.1.1.1
2.60.40.10.46.1.1.1.1

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Segment boundaries for domain 1my5A00

Chopping figure for domain 1my5A00
DomainStart PDB ResidueStop PDB Residue
1my5A00 191 297

Structural Neighbourhood (36 entries)

There are 36 matching structural neighberhood comparisons for CATH ID 2.60.40.10.46.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 36 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1u3zA00 94.50 Protein homodimerization activityLymph node developmentNegative regulation of interleukin-12 biosynthetic processNucleusNuclear factor NF-kappa-B p105 subunit 2.60.40.10 104 50 92 0.66 0.71
1imhC02 88.56 Nuclear factor of activated T-cells 5Transcription from RNA polymerase II promoterSequence-specific DNA binding transcription factor activityNucleusExcretion 2.60.40.10 106 22 90 1.98 2.18
1p7hL02 87.80 Nuclear factor of activated T-cells, cytoplasmic 2Sequence-specific DNA binding transcription factor activityTranscription activator activityNucleusHomo sapiens 2.60.40.10 107 18 89 1.96 2.18
3bmvA03 82.49 Cyclomaltodextrin glucanotransferaseThermoanaerobacterium thermosulfurigenes 2.60.40.10 80 16 73 1.98 2.68
3iagC03 81.61 Transcription factor bindingHeart developmentRegulation of timing of cell differentiationDefense response to bacteriumChromatin binding 2.60.40.10 93 12 81 3.41 4.19
2uzyB03 80.66 Hepatocyte growth factor receptor activityBasal plasma membranePathways in cancerEpithelial cell signaling in Helicobacter pylori infectionProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 87 11 73 1.70 2.30
2uzyB04 79.91 Basal plasma membraneHepatocyte growth factor receptor activityEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 79 13 72 2.16 2.96
2uzxB02 79.50 Hepatocyte growth factor receptor activityBasal plasma membraneEpithelial cell signaling in Helicobacter pylori infectionPathways in cancerProto-oncogene tyrosine-protein kinase Met [EC:2.7.10.1] 2.60.40.10 121 10 70 2.45 3.49
1uadC00 78.99 ExocystRattus norvegicusExocyst complex component 2 2.60.40.10 92 9 83 3.37 4.05
1jmxA03 77.94 Quinohemoprotein amine dehydrogenase 60 kDa subunitPseudomonas putida 2.60.40.10 79 10 73 2.86 3.87
1uctA01 77.91 Immunoglobulin alpha Fc receptorIntegral to plasma membraneCD89 antigenHomo sapiensImmune response 2.60.40.10 91 6 81 3.58 4.40
3edfA01 77.85 CyclomaltodextrinaseFlavobacterium sp. 92 2.60.40.10 90 7 81 3.98 4.89
1cwvA03 77.78 InvasinYersinia pseudotuberculosis 2.60.40.920 102 5 79 3.75 4.72
1iarB01 77.73 Jak-STAT signaling pathwayInterleukin 4 receptorIntegral to plasma membraneInterleukin-4 receptor activityHematopoietic cell lineage 2.60.40.10 96 6 85 3.62 4.26
1cwvA02 76.94 InvasinYersinia pseudotuberculosis 2.60.40.920 97 9 81 4.01 4.93
1pbyA03 76.80 Paracoccus denitrificansQuinohemoprotein amine dehydrogenase 60 kDa subunit 2.60.40.10 76 10 71 2.53 3.56
1p53A01 76.80 Leukocyte migrationAdhesion to symbiontHeterophilic cell-cell adhesionRegulation of leukocyte mediated cytotoxicityT cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell 2.60.40.10 98 3 81 3.43 4.22
2qfpA01 75.51 Fe(3+)-Zn(2+) purple acid phosphatasePhaseolus vulgaris 2.60.40.380 97 7 79 3.64 4.58
1tdqA02 75.31 Nervous system developmentRattus norvegicusTenascinFocal adhesionProteinaceous extracellular matrix 2.60.40.10 90 7 77 3.81 4.91
1fnhA02 75.28 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 6 75 3.07 4.06
1ej6A05 75.20 Mammalian orthoreovirus 3 DearingOuter capsid protein lambda-2 2.60.40.10 95 7 76 3.26 4.25
3k6iA00 75.01 Gallus gallusCadherin-13 2.60.40.60 99 9 75 3.40 4.49
1jz7A02 74.96 Galactose metabolismSphingolipid metabolismOther glycan degradationMetabolic pathwaysLactose catabolic process 2.60.40.320 114 9 83 3.81 4.57
1qr4A01 74.54 TenascinGallus gallus 2.60.40.10 87 9 72 3.50 4.80
1fnhA01 74.46 FibronectinER-Golgi intermediate compartmentPeptide cross-linkingFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 90 6 79 3.37 4.24
1f00I01 74.40 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 2.60.40.920 95 12 83 4.05 4.87
3hn3A02 74.32 Beta-glucuronidaseGlycosaminoglycan degradationGlycosaminoglycan catabolic processMetabolic pathwaysStarch and sucrose metabolism 2.60.40.320 103 8 80 3.82 4.75
1j8kA00 73.98 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 94 9 83 4.09 4.92
3bgaA04 73.84 Galactose metabolismBacteroides thetaiotaomicronBeta-galactosidaseSphingolipid metabolismBeta-galactosidase [EC:3.2.1.23] 2.60.40.320 105 5 84 4.05 4.81
2dtgE05 73.74 Insulin receptorInsulin receptor complexPhosphoinositide 3-kinase bindingPositive regulation of nitric oxide biosynthetic processPositive regulation of respiratory burst 2.60.40.10 98 3 80 3.86 4.80
2gysA03 73.71 Jak-STAT signaling pathwayGranulocyte macrophage colony-stimulating factor receptor complexCytokine receptor common subunit betaCytokine receptor common subunit betaApoptosis 2.60.40.10 86 5 71 3.49 4.85
2gysA01 73.58 Jak-STAT signaling pathwayGranulocyte macrophage colony-stimulating factor receptor complexCytokine receptor common subunit betaCytokine receptor common subunit betaCytokine-cytokine receptor interaction 2.60.40.10 95 5 75 3.71 4.90
1fnfA02 73.53 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 87 8 72 3.34 4.58
1cvrA03 73.41 Gingipain R [EC:3.4.22.37]Porphyromonas gingivalisGingipain R2 2.60.40.10 83 3 76 3.82 4.98
2fnbA00 73.23 FibronectinPeptide cross-linkingER-Golgi intermediate compartmentFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 95 7 79 3.90 4.91
2nziA03 72.16 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 94 6 78 3.76 4.79
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Displaying entries 1 to 36 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1my5A00
TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSM
QLRRPSDRELSEPMEFQYLPDTDDRHR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1my5A00
TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSM
QLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:39

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:39

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:59

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"