CATH Domain: 1mxgA02

1mxgA02

PDB 1mxg, Chain A, Domain 2

CATH Code	Level Description	Links
2	Mainly Beta
2.60	Sandwich
2.60.40	Immunoglobulin-like
2.60.40.1180	Golgi alpha-mannosidase II	Gene3D
2.60.40.1180.3
2.60.40.1180.3.1
2.60.40.1180.3.1.1
2.60.40.1180.3.1.1.1
2.60.40.1180.3.1.1.1.1

Structure
Sequence
History

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Segment boundaries for domain 1mxgA02

Domain	Start PDB Residue	Stop PDB Residue
1mxgA01	1	337
1mxgA02	338	435

What is a Structural Neighbour?

The term "structural neighbour" is used here to describe two CATH domains that share a degree of structural similarity. The SSAP algorithm is used to calculate this similarity and works by generating a structure-based pairwise alignment of the two domains then scoring this alignment using a RMSD score which has been normalised by the length of the larger domain divided by the number of aligned residues (SIMAX).

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.3.1.1.1.1 (SIMAX score < 5)

Match	SSAP score	Match Keywords	Match Superfamily	Length	Sequence Id	Overlap	RMSD	SIMAX
1e43A03	86.42	Alpha-amylaseBacillus amyloliquefaciens	2.60.40.1180	87	22	85	2.15	2.51
1ji1A03	84.75	Neopullulanase 1Thermoactinomyces vulgaris	2.60.40.1180	90	14	81	1.77	2.17
1wzlA04	83.61	Neopullulanase 2Thermoactinomyces vulgaris	2.60.40.1180	83	13	82	2.50	3.02
2guyA02	83.37	Starch and sucrose metabolismAlpha-amylase [EC:3.2.1.1]Aspergillus oryzaeAlpha-amylase A type-1/2Metabolic pathways	2.60.40.1180	102	11	82	2.48	3.01
1nofA01	82.27	Erwinia chrysanthemiXylanase	2.60.40.1180	107	10	81	2.81	3.46
1j0hA04	82.15	NeopullulanaseGeobacillus stearothermophilus	2.60.40.1180	83	12	82	3.37	4.08
1m7xA03	82.10	Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme	2.60.40.1180	106	14	82	2.96	3.61
1ua7A02	81.64	Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways	2.60.40.1180	78	11	77	2.20	2.84
1ea9C04	81.36	Bacillus sp.Cyclomaltodextrinase	2.60.40.1180	81	12	80	2.53	3.14
3edfA03	80.58	CyclomaltodextrinaseFlavobacterium sp. 92	2.60.40.1180	80	7	78	3.08	3.92
3hg3B02	79.52	Galactose metabolismAlpha-galactosidase AExtracellular regionGlycosphingolipid catabolic processGlycosphingolipid biosynthesis - globo series	2.60.40.1180	101	8	87	3.85	4.42
3clwC01	79.37	Bacteroides fragilis NCTC 9343Conserved hypothetical exported protein	2.60.40.1180	100	8	77	3.38	4.39
1zjaA03	79.09	Pseudomonas mesoacidophilaSucrose isomerase	2.60.40.1180	78	10	77	2.87	3.70
1g5aA04	79.03	AmylosucraseNeisseria polysaccharea	2.60.40.1180	74	13	71	3.20	4.48
1uasA02	78.98	Alpha-galactosidaseOryza sativa Japonica Group	2.60.40.1180	88	9	84	3.61	4.26
1uokA03	78.93	Bacillus cereusOligo-1,6-glucosidase	2.60.40.1180	78	10	78	2.66	3.39
1iv8A05	78.39	Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme	2.60.40.1180	66	7	66	2.46	3.71
1ktbA02	78.31	Alpha-N-acetylgalactosaminidaseGallus gallus	2.60.40.1180	91	7	83	4.01	4.79
1bf2A03	77.85	Pseudomonas amyloderamosaIsoamylase	2.60.40.1180	114	9	73	3.34	4.53
1lwjA03	77.52	4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways	2.60.40.1180	50	18	51	1.59	3.12
1gjwA02	76.97	Thermotoga maritimaMaltodextrin glycosyltransferase	2.60.40.1180	68	10	66	3.14	4.73
1ht6A02	75.88	Alpha-amylase type A isozymeHordeum vulgare	2.60.40.1180	57	15	55	2.40	4.36
1eh9A02	73.32	Sulfolobus solfataricusMalto-oligosyltrehalose trehalohydrolase	2.60.40.1180	62	9	63	3.14	4.96

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Domain ATOM Sequence

>pdb|1mxgA02
GGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIHEYTGNLGGWVDKRVDSSGWVYLEAPPH
DPANGYYGYSVWSYCGVG

BLAST against CATH

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Domain COMBS Sequence

>pdb|1mxgA02
GGSTTIVYYDNDELIFVRNGDSRRPGLITYINLSPNWVGRWVYVPKFAGACIHEYTGNLGGWVDKRVDSSGWVYLEAPPH
DPANGYYGYSVWSYCGVG

BLAST against CATH

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Domain History Events (12)

Domain assigned by auto on 20 Oct 2008 14:27

Assigning to "2.60.40.1180" based on similarity with "1mwoA02"

Flow stage update by auto on 20 Oct 2008 14:23

No in_process hits for Domain "1mxgA02" ready to be processed