CATH Domain: 1mtpA02 XML data for domain: 1mtpA02

Molscript image for 1mtpA02
1mtpA02
PDB coordinates for domain 1mtpA02

PDB 1mtp, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.39 Alpha-1-antitrypsin; domain 1
2.30.39.10 Alpha-1-antitrypsin, domain 1 Gene3D
2.30.39.10.13
2.30.39.10.13.1
2.30.39.10.13.1.1
2.30.39.10.13.1.1.1
2.30.39.10.13.1.1.1.1

[top]
Segment boundaries for domain 1mtpA02

Chopping figure for domain 1mtpA02
DomainStart PDB ResidueStop PDB Residue
1mtpA01 5 167
1mtpA01 259 323
1mtpA02 168 258

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.30.39.10.13.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hp7A01 87.82 Alpha-1-antitrypsinProtease bindingAlpha-1-antitrypsinHomo sapiensExtracellular space 2.30.39.10 95 19 93 2.24 2.39
3f02B02 87.72 Peripheral nervous system developmentNeuroserpinHomo sapiensCentral nervous system developmentSerine-type endopeptidase inhibitor activity 2.30.39.10 99 17 88 1.78 2.00
1jmoA02 80.52 Heparin cofactor IIHomo sapiensHeparin cofactor 2Complement and coagulation cascades 2.30.39.10 150 17 60 2.04 3.36
1k9oI02 77.75 Manduca sextaAlaserpinProtein binding 2.30.39.10 161 21 56 2.25 3.98
1imvA01 76.46 Negative regulation of angiogenesisHomo sapiensPigment epithelium-derived factorCell proliferationPositive regulation of neurogenesis 2.30.39.10 169 17 53 2.56 4.75
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1mtpA02
WTTPFEAHLTREGTFRTPRGPKRVPFMHRTKTMPYATARGWRMVTLHAHDELAVDVLLPPGTNAAAVPTAPLLTALHRRS
ASTSVELALPR
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1mtpA02
WTTPFEAHLTREGTFRTPRGPKRVPFMHRTKTMPYATARGWRMVTLHAHDELAVDVLLPPGTNAAAVPTAPLLTALHRRS
ASTSVELALPR
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:16

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"