CATH Domain: 1mseC02 XML data for domain: 1mseC02

Molscript image for 1mseC02
1mseC02
PDB coordinates for domain 1mseC02

PDB 1mse, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.21
1.10.10.60.21.1
1.10.10.60.21.1.1
1.10.10.60.21.1.1.1
1.10.10.60.21.1.1.1.5

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Segment boundaries for domain 1mseC02

Chopping figure for domain 1mseC02
DomainStart PDB ResidueStop PDB Residue
1mseC01 89 144
1mseC02 145 193

Structural Neighbourhood (44 entries)

There are 44 matching structural neighberhood comparisons for CATH ID 1.10.10.60.21.1.1.1.5 (SIMAX score < 5)

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Displaying entries 1 to 44 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2k9nA02 88.29 MYB24Trichomonas vaginalis 1.10.10.60 54 36 85 1.76 2.07
1tc3C00 87.68 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 8 86 2.20 2.55
1iv6A00 87.46 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 23 80 1.80 2.23
1ojlA03 86.14 Two-component systemTwo-component system, NtrC family, response regulator HydGTranscriptional regulatory protein zraRSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.60 47 17 89 3.68 4.12
2fq4A01 84.62 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 17 85 2.80 3.29
1fexA00 84.53 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 17 77 1.94 2.49
1au7A02 84.50 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 6 78 2.49 3.15
1umqA00 84.35 Rhodobacter sphaeroides 2.4.1Photosynthetic apparatus regulatory protein regA 1.10.10.60 60 10 75 3.54 4.72
1irzA00 83.81 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 19 71 2.84 3.95
2dmqA01 83.68 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 8 75 2.46 3.26
3ccyA01 83.53 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 9 82 2.71 3.28
2raeA01 83.40 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 6 86 3.59 4.13
2hyjA01 83.10 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 8 86 3.20 3.68
1zk8A01 83.00 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 46 13 91 4.01 4.39
1b8iA00 82.14 Protein domain specific bindingDrosophila melanogasterPositive regulation of muscle organ developmentMesodermal cell fate specificationTranscription repressor activity 1.10.10.60 62 17 72 2.49 3.43
1k6yA01 81.67 POL polyproteinHuman immunodeficiency virus 1 1.10.10.200 46 10 91 3.73 4.09
1mh3A03 81.11 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 8 88 3.61 4.09
1b72A00 80.79 Homeobox protein Hox-B1Protein domain specific bindingHomeobox protein HoxA/B/D1Homo sapiens 1.10.10.60 68 15 66 2.36 3.57
1nk3P00 80.66 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 10 71 2.73 3.82
3c2bA01 80.30 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 6 80 3.32 4.13
1ignB02 80.13 Chromatin silencing at telomereMyb-like DNA-binding protein RAP1Protein bindingProtection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 92 26 50 1.66 3.32
1io2A02 80.07 DNA replicationRibonuclease HIIThermococcus kodakarensisRibonuclease HII [EC:3.1.26.4] 1.10.10.460 47 4 78 2.96 3.76
3f0cA01 80.00 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 4 93 4.67 4.99
1ng6A02 79.98 Hypothetical proteinBacillus subtilisUncharacterized protein yqeY 1.10.10.410 57 15 80 3.60 4.46
3bqzA01 79.86 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 4 81 3.76 4.61
1o4xA02 79.78 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 13 84 3.60 4.24
1b8iB00 79.61 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 10 79 2.72 3.43
2id6A01 79.11 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 4 82 4.02 4.87
1ignA01 78.94 Chromatin silencing at telomereProtein bindingMyb-like DNA-binding protein RAP1Protection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 93 17 49 2.25 4.55
1hcrA00 78.69 Salmonella enterica subsp. enterica serovar TyphimuriumDNA-invertase hin 1.10.10.60 52 6 76 2.77 3.60
1wjhA00 78.51 1.10.10.60 76 13 59 2.45 4.14
1ekeB02 78.31 DNA replicationRibonuclease HIIMethanocaldococcus jannaschiiRibonuclease HII [EC:3.1.26.4] 1.10.10.460 47 2 78 3.81 4.84
1lfbA00 78.21 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 17 59 2.47 4.13
1m1eB01 78.03 Wnt signaling pathwayBeta-catenin-interacting protein 1 (Inhibitor of beta-catenin and Tcf-4)Homo sapiensBeta-catenin-interacting protein 1Signal transduction 1.10.10.490 46 6 91 4.45 4.87
1hlvA01 77.51 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 58 17 74 2.72 3.67
1ic8A02 76.97 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 17 62 2.50 4.02
1le8B00 76.60 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Donor selectionSequence-specific DNA binding 1.10.10.60 74 17 62 2.81 4.52
1iufA02 76.38 Centromeric DNA bindingHistone modificationARS-binding protein 1Schizosaccharomyces pombeCondensed nuclear chromosome, centromeric region 1.10.10.60 64 4 70 2.74 3.90
1pufB00 76.04 CytoplasmPre-B-cell leukemia transcription factor 1Transcription factor bindingPre-B-cell leukemia transcription factorNucleus 1.10.10.60 73 10 63 2.69 4.27
1wh5A00 75.70 Arabidopsis thalianaZF-HD homeobox protein At5g65410 1.10.10.60 80 19 57 2.25 3.91
1sauA02 75.25 Archaeoglobus fulgidusSulfite reductase, desulfoviridin-type subunit gamma (DsvC) 1.10.10.370 70 8 60 2.93 4.88
2ezhA00 73.07 TransposaseEnterobacteria phage Mu 1.10.10.60 65 8 69 3.20 4.62
1twfJ00 72.39 Pyrimidine metabolismPurine metabolismDNA-directed RNA Polymerase II subunit LRNA polymeraseProtein binding 1.10.10.60 65 2 70 3.53 4.99
1gdtB03 72.03 Transposon gamma-delta resolvaseEscherichia coli K-12 1.10.10.60 45 4 80 3.62 4.50
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Displaying entries 1 to 44 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mseC02
TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mseC02
TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:16

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"