CATH Domain: 1mseC01 XML data for domain: 1mseC01

Molscript image for 1mseC01
1mseC01
PDB coordinates for domain 1mseC01

PDB 1mse, Chain C, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.3
1.10.10.60.3.1
1.10.10.60.3.1.1
1.10.10.60.3.1.1.3
1.10.10.60.3.1.1.3.1

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Segment boundaries for domain 1mseC01

Chopping figure for domain 1mseC01
DomainStart PDB ResidueStop PDB Residue
1mseC01 89 144
1mseC02 145 193

Structural Neighbourhood (42 entries)

There are 42 matching structural neighberhood comparisons for CATH ID 1.10.10.60.3.1.1.3.1 (SIMAX score < 5)

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Displaying entries 1 to 42 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gv2A02 93.56 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 32 88 0.85 0.96
1w0tA00 92.13 Protein homooligomerizationPositive regulation of mitotic cell cycleTelomere maintenance via telomere shorteningNegative regulation of telomerase activityG2/M transition of mitotic cell cycle 1.10.10.60 52 30 96 1.96 2.04
1w0uA00 91.66 Protein homodimerization activityTelomeric repeat-binding factor 2Protein C-terminus bindingTelomeric loop formationProtection from non-homologous end joining at telomere 1.10.10.60 55 30 90 2.40 2.64
1iv6A00 88.03 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 30 91 3.31 3.63
1tc3C00 87.98 Caenorhabditis elegansTransposable element Tc3 transposase 1.10.10.60 51 7 92 3.28 3.55
1o4xA02 86.72 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 15 86 2.45 2.82
2k9nA02 86.65 MYB24Trichomonas vaginalis 1.10.10.60 54 32 87 2.05 2.36
1e3oC02 86.60 POU domain transcription factor, class 2POU domain, class 2, transcription factor 1Protein bindingSequence-specific DNA binding transcription factor activityNegative regulation of transcription, DNA-dependent 1.10.10.60 48 14 86 3.02 3.49
1mh3A03 86.47 Transcription corepressor activityMeiosis - yeastNucleusRegulation of transcription, mating-type specificMating-type protein A1 1.10.10.60 51 13 88 2.46 2.78
1au7A02 85.22 Positive regulation of transcription from RNA polymerase II promoterRattus norvegicusNucleusNegative regulation of transcription from RNA polymerase II promoterAdenohypophysis development 1.10.10.60 57 11 89 3.73 4.17
1fexA00 84.99 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 15 84 2.54 3.00
1jggA00 84.83 Trunk segmentationMotor axon guidanceMuscle organ developmentHomeobox even-skipped homolog proteinSegmentation protein even-skipped 1.10.10.60 57 17 87 4.21 4.80
1fjlC00 84.73 Transcription activator activitySequence-specific DNA bindingSegmentation protein pairedDrosophila melanogasterPositive regulation of transcription, DNA-dependent 1.10.10.60 59 5 83 3.62 4.36
2hddB00 84.43 Trunk segmentationImaginal disc-derived female genitalia developmentDrosophila melanogasterImaginal disc-derived male genitalia developmentProtein binding 1.10.10.60 56 15 89 3.76 4.21
1irzA00 84.39 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 11 79 3.32 4.17
2dmqA01 83.98 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 5 78 2.39 3.03
2fq4A01 83.21 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 12 78 2.95 3.74
1t56A01 83.15 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 4 76 3.22 4.19
1b8iB00 83.01 Oenocyte developmentLeg disc proximal/distal pattern formationTranscription factor complexBrain developmentDrosophila melanogaster 1.10.10.60 58 13 82 2.96 3.58
1zkgA01 82.50 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 13 76 3.32 4.32
2ibdA01 82.44 Rhodococcus jostii RHA1Possible transcriptional regulator 1.10.10.60 45 6 75 2.97 3.96
1k61A00 82.44 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 60 17 81 2.94 3.60
2hyjA01 82.15 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 6 75 2.71 3.61
3ccyA01 82.05 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 6 75 3.36 4.48
3f0cA01 82.01 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 12 80 3.82 4.73
2i10A01 81.39 Rhodococcus jostii RHA1Transcriptional regulator, TetR family protein 1.10.10.60 58 9 77 3.76 4.85
3bqzA01 81.01 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 4 80 3.81 4.72
1ng6A02 80.71 Hypothetical proteinBacillus subtilisUncharacterized protein yqeY 1.10.10.410 57 11 82 3.37 4.09
1ignB02 79.68 Chromatin silencing at telomereMyb-like DNA-binding protein RAP1Protein bindingProtection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 92 21 53 2.24 4.21
1ignA01 79.44 Chromatin silencing at telomereProtein bindingMyb-like DNA-binding protein RAP1Protection from non-homologous end joining at telomereDNA-binding protein RAP1 1.10.10.60 93 17 52 2.35 4.46
1io2A02 79.26 DNA replicationRibonuclease HIIThermococcus kodakarensisRibonuclease HII [EC:3.1.26.4] 1.10.10.460 47 6 78 3.91 4.96
3bqyA01 79.15 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 48 8 84 3.80 4.49
1lfbA00 79.07 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 9 62 2.59 4.15
1hcrA00 78.54 Salmonella enterica subsp. enterica serovar TyphimuriumDNA-invertase hin 1.10.10.60 52 9 86 4.24 4.90
3c2bA01 78.21 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 7 76 3.58 4.65
1ic8A02 78.16 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 11 67 2.90 4.29
1rr7A02 77.99 Middle operon regulatorEnterobacteria phage Mu 1.10.10.60 48 4 92 4.60 4.98
1hlvA01 77.90 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 58 15 68 3.28 4.76
1mnmC00 77.34 Mating-type protein A2Meiosis - yeastMating-type protein ALPHA2Sequence-specific DNA bindingDonor selection 1.10.10.60 77 17 64 3.18 4.90
1g2hA00 76.55 Transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transportHaemophilus influenzaeTranscriptional regulatory protein tyrR 1.10.10.60 61 11 78 3.69 4.69
1bl0A02 74.82 Multiple antibiotic resistance protein marAAraC family transcriptional regulator, multiple antibiotic resistance protein MarAEscherichia coli K-12 1.10.10.60 60 7 66 3.10 4.65
1hlvA02 72.40 Centromere protein BMajor centromere autoantigen BHomo sapiensChromosome, centromeric region 1.10.10.60 60 11 75 3.22 4.29
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Displaying entries 1 to 42 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mseC01
MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mseC01
MLIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:16

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"