CATH Domain: 1mqiA02 XML data for domain: 1mqiA02

Molscript image for 1mqiA02
1mqiA02
PDB coordinates for domain 1mqiA02

PDB 1mqi, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.5
3.40.190.10.5.2
3.40.190.10.5.2.1
3.40.190.10.5.2.1.1
3.40.190.10.5.2.1.1.1

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Segment boundaries for domain 1mqiA02

Chopping figure for domain 1mqiA02
DomainStart PDB ResidueStop PDB Residue
1mqiA01 110 218
1mqiA02 4 109
1mqiA02 219 258

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.190.10.5.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2pyyB01 89.52 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue 3.40.190.10 125 32 82 2.37 2.89
1pb7A01 89.01 Calcium signaling pathwayRattus norvegicusAlzheimer's diseaseProtein bindingNeuroactive ligand-receptor interaction 3.40.190.10 173 37 80 2.06 2.56
1ii5A01 88.55 Polar amino acid transport system substrate-binding proteinSynechocystis sp. PCC 6803Slr1257 protein 3.40.190.10 128 19 83 1.40 1.68
1lstA01 88.42 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 19 86 3.23 3.72
2pvuA01 87.99 Geobacillus stearothermophilusArtJ 3.40.190.10 122 23 81 2.60 3.19
2ieeA01 85.09 Bacillus subtilisProbable ABC transporter extracellular-binding protein yckBPolar amino acid transport system substrate-binding protein 3.40.190.10 127 19 80 2.33 2.91
2o1mA01 82.69 Bacillus subtilisL-cystine-binding protein tcyKPolar amino acid transport system substrate-binding protein 3.40.190.10 108 16 69 2.72 3.90
1ixcA02 77.09 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 99 11 64 2.96 4.62
1xs5A01 77.06 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 6 78 3.78 4.81
1i6aA01 74.98 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 12 68 3.21 4.65
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mqiA02
KTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA
DIAIAPLTITLVREEVIDFSKPFMSLGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mqiA02
KTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKA
DIAIAPLTITLVREEVIDFSKPFMSLGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:16

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"