CATH Domain: 1mnmD00 XML data for domain: 1mnmD00

Molscript image for 1mnmD00
1mnmD00
PDB coordinates for domain 1mnmD00

PDB 1mnm, Chain D, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.51
1.10.10.60.51.1
1.10.10.60.51.1.1
1.10.10.60.51.1.1.1
1.10.10.60.51.1.1.1.2

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Segment boundaries for domain 1mnmD00

Chopping figure for domain 1mnmD00
DomainStart PDB ResidueStop PDB Residue
1mnmD00 113 189

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 1.10.10.60.51.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2dmqA01 86.35 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 28 66 0.91 1.37
1o4xA02 85.19 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 22 67 1.35 2.00
1lfbA00 84.89 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingRattus norvegicusNegative regulation of transcriptionDouble-stranded DNA binding 1.10.10.60 77 12 70 1.68 2.40
1nk3P00 84.51 Ectoderm developmentTranscription factor bindingHomeobox protein vndBrain developmentDrosophila melanogaster 1.10.10.60 63 31 76 2.39 3.12
1ic8A02 82.82 Promoter bindingProtein homodimerization activityNucleusPositive regulation of transcription, DNA-dependentGlucose homeostasis 1.10.10.60 74 13 68 1.72 2.50
1irzA00 78.24 Regulation of anthocyanin metabolic processCytokinin mediated signaling pathwayNucleusSequence-specific DNA binding transcription factor activityArabidopsis thaliana 1.10.10.60 64 12 80 3.98 4.94
1iv6A00 77.25 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 14 70 2.99 4.26
1fexA00 76.55 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 15 67 2.87 4.25
1bobA03 75.82 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 14 70 2.68 3.82
2f48A03 75.50 Fructose and mannose metabolismPyrophosphate--fructose-6-phosphate 1-phosphotransferase [EC:2.7.1.90]Borrelia burgdorferiPyrophosphate--fructose 6-phosphate 1-phosphotransferase, beta subunit (PfpB) 1.10.10.480 75 8 72 3.43 4.72
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mnmD00
GLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mnmD00
QLTQKNKSADGLVFNVVTQDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN
RRRKEKT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"