CATH Domain: 1ml8A01 XML data for domain: 1ml8A01

Molscript image for 1ml8A01
1ml8A01
PDB coordinates for domain 1ml8A01

PDB 1ml8, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.20 Single Sheet
2.20.25 N-terminal domain of TfIIb
2.20.25.10 Gene3D
2.20.25.10.12
2.20.25.10.12.1
2.20.25.10.12.1.1
2.20.25.10.12.1.1.1
2.20.25.10.12.1.1.1.1

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Segment boundaries for domain 1ml8A01

Chopping figure for domain 1ml8A01
DomainStart PDB ResidueStop PDB Residue
1ml8A01 1 34
1ml8A02 35 134

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.20.25.10.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1lqlA01 86.90 Mycoplasma pneumoniaeUncharacterized protein MG427 homolog 2.20.25.10 26 19 73 1.23 1.67
1q16A03 73.77 Nitrogen metabolismTwo-component systemProtein bindingRespiratory nitrate reductase 1 alpha chainEscherichia coli K-12 2.20.25.90 47 2 65 2.74 4.15
1qypA00 72.87 Thermococcus celerDNA-directed RNA polymerase subunit M 2.20.25.10 57 11 47 2.18 4.60
1y1vS01 68.37 Transcription elongation factor S-IITranscription elongation from RNA polymerase II promoterPositive transcription elongation factor activityProtein bindingTranscription elongation factor S-II 2.20.25.10 70 11 37 1.54 4.15
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ml8A01
MQARVKWVEGLTFLGESASGHQILMDGNSGDKAP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ml8A01
MQARVKWVEGLTFLGESASGHQILMDGNSGDKAP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:15

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"