CATH Domain: 1mkmA02 XML data for domain: 1mkmA02

Molscript image for 1mkmA02
1mkmA02
PDB coordinates for domain 1mkmA02

PDB 1mkm, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.640 Single helix bin Gene3D
1.20.5.640.1
1.20.5.640.1.1
1.20.5.640.1.1.1
1.20.5.640.1.1.1.1
1.20.5.640.1.1.1.1.1

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Segment boundaries for domain 1mkmA02

Chopping figure for domain 1mkmA02
DomainStart PDB ResidueStop PDB Residue
1mkmA01 1 60
1mkmA02 61 74
1mkmA03 75 246

Structural Neighbourhood (38 entries)

There are 38 matching structural neighberhood comparisons for CATH ID 1.20.5.640.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 38 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1d66B02 92.96 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 14 93 0.63 0.68
2aefB02 74.82 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 1.20.5.870 28 14 50 1.08 2.16
1onvB00 73.44 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 0 66 1.20 1.80
1vf5C03 73.25 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 7 43 0.62 1.42
1qexA01 70.47 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 7 40 0.85 2.12
2ga1A01 69.16 Anabaena variabilis ATCC 29413Putative uncharacterized protein 1.20.5.800 29 0 48 2.37 4.91
3b4sA02 68.20 Vibrio parahaemolyticusLuxT 1.20.5.830 41 7 34 0.58 1.70
1t6aA01 68.05 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 0 32 0.52 1.60
2cxnA03 67.23 Amino sugar and nucleotide sugar metabolismGlucose-6-phosphate isomeraseGlucose-6-phosphate isomerase [EC:5.3.1.9]Metabolic pathwaysMus musculus 1.10.1390.10 41 7 34 0.78 2.28
2k1aA00 67.12 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 14 33 0.78 2.34
1ozhA03 66.26 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 21 45 1.70 3.71
1qgkB00 66.24 DNA metabolic processG2 phase of mitotic cell cycleNuclear localization sequence bindingRegulation of DNA recombinationImportin subunit alpha-2 1.20.5.690 44 0 31 0.68 2.14
1kv4A00 65.87 Moricin-1Bombyx mori 1.20.5.750 42 14 33 0.82 2.46
2zjsE00 63.63 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 7 30 0.87 2.86
1ybkA00 63.57 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 7 26 0.58 2.15
1xrdA01 63.20 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 7 32 1.40 4.30
1u57A00 63.09 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 0 29 0.98 3.36
1rquA01 62.91 Ribosome50S ribosomal protein L7/L12Large subunit ribosomal protein L7/L12Cytosolic large ribosomal subunitStructural constituent of ribosome 1.20.5.710 52 0 26 0.67 2.49
1s5lH00 62.40 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 53 14 26 0.66 2.50
2prrA01 62.29 Ralstonia eutropha JMP134Alkylhydroperoxidase AhpD core:Uncharacterised peroxidase-related 1.20.5.810 52 0 26 0.82 3.05
3e7kA00 61.62 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 0 25 0.72 2.78
3bz1H01 61.52 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 7 27 0.73 2.66
2k37A00 60.61 Bacteriochlorophyll c-binding proteinChlorobaculum tepidumChlorosome envelope protein A 1.20.5.950 59 7 23 0.63 2.66
1rh5B00 59.76 Protein transport protein SEC61 subunit gamma and related proteinsProtein exportMethanocaldococcus jannaschiiPreprotein translocase subunit secE 1.20.5.820 56 7 25 0.86 3.44
2b9bA04 58.59 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 21 22 0.64 2.83
1uixA00 58.07 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 0 20 0.62 3.01
2w83C00 57.88 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 0 20 0.62 2.97
2chgA02 56.17 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 48 21 0.76 3.58
1pl5A00 55.70 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 14 18 0.66 3.54
1y9bA00 55.10 Vibrio choleraePutative uncharacterized protein 1.20.5.780 78 0 17 0.62 3.45
2jp3A00 54.69 Potassium channel activityRattus norvegicusAldosterone-regulated sodium reabsorptionFXYD domain-containing ion transport regulator 4FXYD domain containing ion transport regulator 4 1.20.5.940 67 7 20 1.01 4.83
2kseA00 54.05 Two-component systemTwo-component system, OmpR family, sensor histidine kinase QseC [EC:2.7.13.3]Sensor protein qseCEscherichia coli K-12 1.20.5.1040 77 21 18 0.71 3.91
3bz1E00 52.72 PhotosynthesisPhotosystem II PsbE proteinThermosynechococcus elongatus BP-1Cytochrome b559 subunit alphaMetabolic pathways 1.20.5.860 82 0 17 0.65 3.81
2zvoB00 52.25 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 7 15 0.68 4.27
2c82A03 52.24 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Mycobacterium tuberculosis 1.10.1740.10 87 48 16 0.71 4.41
2v4hB00 52.17 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 0 15 0.61 3.96
2wpqA00 50.34 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 21 14 0.54 3.82
2c4jA02 49.65 Glutathione S-transferase [EC:2.5.1.18]Drug metabolism - cytochrome P450Metabolism of xenobiotics by cytochrome P450Glutathione S-transferase Mu 2Homo sapiens 1.20.1050.10 105 14 13 0.49 3.67
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Displaying entries 1 to 38 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mkmA02
GYKLIEYGSFVLRR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mkmA02
GYKLIEYGSFVLRR
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 17:15

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"