CATH Domain: 1mkhA00 XML data for domain: 1mkhA00

Molscript image for 1mkhA00
1mkhA00
PDB coordinates for domain 1mkhA00

PDB 1mkh, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.7
2.40.50.140.7.1
2.40.50.140.7.1.1
2.40.50.140.7.1.1.1
2.40.50.140.7.1.1.1.1

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Segment boundaries for domain 1mkhA00

Chopping figure for domain 1mkhA00
DomainStart PDB ResidueStop PDB Residue
1mkhA00 1 107

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.50.140.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2cwpA00 89.48 112aa long hypothetical methionyl-tRNA synthetasePyrococcus horikoshii 2.40.50.140 109 35 97 1.45 1.49
1b7yB02 82.54 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 2.40.50.140 116 16 80 3.51 4.38
1fl0A00 81.83 Leukocyte migrationAminoacyl-tRNA synthetase multienzyme complexProtein homodimerization activityNegative regulation of endothelial cell proliferationExtracellular space 2.40.50.140 164 36 61 1.37 2.22
3d31A02 74.24 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 13 43 1.79 4.12
1khiA02 73.67 Neurospora crassaWoronin body major protein 2.40.50.140 72 12 59 2.92 4.91
1g29102 73.61 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 13 41 1.87 4.50
2p5zX04 73.36 Escherichia coli O6Putative uncharacterized protein 2.40.50.230 65 7 47 2.31 4.90
1oxxK02 72.88 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 15 40 1.96 4.83
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mkhA00
MYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLGIGSQGM
LLAADDGERVALLMPDKEVKLGAKVR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mkhA00
MYVKFDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQG
MLLAADDGERVALLMPDKEVKLGAKVR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:52

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"