CATH Domain: 1mjfB02 XML data for domain: 1mjfB02

Molscript image for 1mjfB02
1mjfB02
PDB coordinates for domain 1mjfB02

PDB 1mjf, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.12
3.40.50.150.12.1
3.40.50.150.12.1.1
3.40.50.150.12.1.1.1
3.40.50.150.12.1.1.1.2

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Segment boundaries for domain 1mjfB02

Chopping figure for domain 1mjfB02
DomainStart PDB ResidueStop PDB Residue
1mjfB01 3 54
1mjfB02 55 278

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.40.50.150.12.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1uirA02 87.46 Arginine and proline metabolismGlutathione metabolismMetabolic pathwaysCysteine and methionine metabolismBeta-Alanine metabolism 3.40.50.150 253 33 83 1.61 1.93
3c6kB03 84.80 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.40.50.150 187 24 78 2.73 3.46
2qy6A01 77.85 Escherichia coli O157:H7TRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC 3.40.50.150 234 10 71 2.99 4.19
2b3tA02 77.60 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 14 72 3.36 4.66
1m6yA01 77.50 Thermotoga maritimaS-adenosyl-methyltransferase [EC:2.1.1.-]S-adenosyl-L-methionine-dependent methyltransferase mraW 3.40.50.150 180 13 72 2.79 3.87
1g8aA02 77.30 Pyrococcus horikoshiiFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseFibrillarin-like pre-rRNA processing protein 3.40.50.150 176 14 73 3.37 4.61
3bxoA01 77.08 Streptomyces venezuelaeN,N-dimethyltransferase 3.40.50.150 177 14 70 2.90 4.10
1ej0A00 77.05 Ribosomal RNA large subunit methyltransferase ERRNA (uridine-2'-O-)-methyltransferase activityEnzyme-directed rRNA 2'-O-methylationRibosomal RNA large subunit methyltransferase E [EC:2.1.1.-]Escherichia coli K-12 3.40.50.150 180 11 70 3.38 4.81
3ftdA01 76.68 Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase AAquifex aeolicus 3.40.50.150 177 12 70 3.47 4.90
1ne2B00 76.39 Putative uncharacterized protein Ta1320Putative methylaseThermoplasma acidophilum 3.40.50.150 180 10 68 3.36 4.87
1sqgA04 75.93 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.40.50.150 198 15 72 3.23 4.48
2fhpA00 75.58 Methylase, putativeEnterococcus faecalis 3.40.50.150 177 11 67 3.05 4.51
2py6A03 75.19 Methylobacillus flagellatus KTMethyltransferase FkbM 3.40.50.150 177 9 69 3.33 4.80
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mjfB02
LGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK
AKLTIGDGFEFNNRGFDVIIADSTDPVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSF
PVIGYASPWAFLVGVKGDIDFTKIDRERAKKLQLEYYDPLMHETLFQMPKYIRETLQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mjfB02
LGERSYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK
AKLTIGDGFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD
RVYYYSFPVIGYASPWAFLVGVKGDIDFTKIDRERAKKLQLEYYDPLMHETLFQMPKYIRETLQRL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:15

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"