CATH Domain: 1mj5A00 XML data for domain: 1mj5A00

Molscript image for 1mj5A00
1mj5A00
PDB coordinates for domain 1mj5A00

PDB 1mj5, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1820 Gene3D
3.40.50.1820.3
3.40.50.1820.3.1
3.40.50.1820.3.1.1
3.40.50.1820.3.1.1.1
3.40.50.1820.3.1.1.1.1

Segment boundaries for domain 1mj5A00

Chopping figure for domain 1mj5A00
DomainStart PDB ResidueStop PDB Residue
1mj5A00 2 299

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.40.50.1820.3.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2psfA00 91.14 Renilla reniformisRenilla-luciferin 2-monooxygenase 3.40.50.1820 307 39 94 2.13 2.25
1b6gA00 83.45 Haloalkane dehalogenaseXanthobacter autotrophicus 3.40.50.1820 308 22 89 3.04 3.39
1j1iA00 82.53 Meta cleavage compound hydrolaseJanthinobacterium sp. J3 3.40.50.1820 258 17 84 2.93 3.47
1zoiA00 81.72 EsterasePseudomonas putida 3.40.50.1820 275 18 85 2.88 3.35
1brtA00 81.66 Streptomyces aureofaciensNon-haem bromoperoxidase BPO-A2 3.40.50.1820 277 18 85 2.98 3.47
1iupA00 81.60 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolasePseudomonas fluorescens 3.40.50.1820 271 16 88 3.37 3.79
3i28A03 80.92 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1820 312 21 87 3.05 3.50
1c4xA00 80.04 Biphenyl degradation2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase2,6-dioxo-6-phenylhexa-3-enoate hydrolase [EC:3.7.1.8]Metabolic pathwaysFluorene degradation 3.40.50.1820 281 15 90 3.48 3.86
1ehyA00 79.86 3.40.50.1820 282 18 89 3.53 3.94
1mtzA00 79.79 Arginine and proline metabolismProline iminopeptidase [EC:3.4.11.5]Proline iminopeptidaseThermoplasma acidophilum 3.40.50.1820 290 12 90 4.24 4.70
3bwxA00 79.54 Alpha/beta hydrolaseNovosphingobium aromaticivorans DSM 12444 3.40.50.1820 275 14 83 3.64 4.38
1m33A00 78.64 Cofactor bindingBiotin biosynthesis protein BioHCarboxylesterase bioHCarboxylesterase activityEscherichia coli K-12 3.40.50.1820 251 15 82 3.17 3.84
2qmqA00 77.82 Mus musculusProtein NDRG2 3.40.50.1820 269 9 82 3.87 4.69
3bdiA00 77.63 Putative uncharacterized protein Ta0194Thermoplasma acidophilum 3.40.50.1820 199 15 64 2.97 4.62
1r3dA00 77.26 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathways2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [EC:4.2.99.20]Vibrio choleraePutative uncharacterized protein 3.40.50.1820 253 11 79 3.92 4.93
1wm1A00 76.25 Proline iminopeptidaseSerratia marcescens 3.40.50.1820 313 13 86 4.09 4.72
2i3dB00 75.54 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.1820 212 9 62 3.13 5.00
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|1mj5A00
SLGAKPFGEKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERYA
YAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEE
LVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLFI
NAEPGALTTGRMRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFVRRLRPAHHH    

Domain COMBS Sequence

>pdb|1mj5A00
MSLGAKPFGEKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLGRLIACDLIGMGDSDKLDPSGPERY
AYAEHRDYLDALWEALDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGE
ELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIPKLF
INAEPGALTTGRMRDFCRTWPNQTEITVAGAHFIQEDSPDEIGAAIAAFVRRLRPAHHHHHH    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:43

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"