CATH Domain: 1mixA01 XML data for domain: 1mixA01

Molscript image for 1mixA01
1mixA01
PDB coordinates for domain 1mixA01

PDB 1mix, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.80 Acyl-CoA Binding Protein
1.20.80.10 Gene3D
1.20.80.10.2
1.20.80.10.2.1
1.20.80.10.2.1.1
1.20.80.10.2.1.1.1
1.20.80.10.2.1.1.1.1

[top]
Segment boundaries for domain 1mixA01

Chopping figure for domain 1mixA01
DomainStart PDB ResidueStop PDB Residue
1mixA01 209 306
1mixA02 308 400

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.20.80.10.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1h4rA02 89.92 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 1.20.80.10 117 25 83 1.63 1.95
2he7A02 89.10 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 1.20.80.10 108 24 88 1.67 1.88
3flvA00 88.29 Homo sapiensAcyl-CoA-binding domain-containing protein 5 1.20.80.10 90 15 84 3.64 4.30
1hbkA00 86.14 Plasmodium falciparum 3D7Acyl CoA binding protein 1.20.80.10 89 16 83 3.75 4.48
1st7A00 80.59 Acyl-CoA-binding proteinLong-chain fatty acid transporter activityNucleusLong-chain fatty acid transportFatty acid metabolic process 1.20.80.10 86 20 82 3.30 3.99
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1mixA01
PVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGN
MSEIEAKVRYVKLARSLK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1mixA01
PVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHKNCGN
MSEIEAKVRYVKLARSLK
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:15

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"