CATH Domain: 1mi3A00 XML data for domain: 1mi3A00

Molscript image for 1mi3A00
1mi3A00
PDB coordinates for domain 1mi3A00

PDB 1mi3, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.100 NADP-dependent oxidoreductase Gene3D
3.20.20.100.5
3.20.20.100.5.1
3.20.20.100.5.1.1
3.20.20.100.5.1.1.1
3.20.20.100.5.1.1.1.1

[top]
Segment boundaries for domain 1mi3A00

Chopping figure for domain 1mi3A00
DomainStart PDB ResidueStop PDB Residue
1mi3A00 4 322

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.20.20.100.5.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2wzmA00 88.51 Uncharacterized oxidoreductase MSMEG_2407Mycobacterium smegmatis str. MC2 155 3.20.20.100 274 35 84 1.61 1.90
3eauA00 83.07 Rattus norvegicusVoltage-gated potassium channel subunit beta-2Potassium voltage-gated channel, Shaker-related subfamily A, beta member 2Protein heterooligomerizationProtein binding 3.20.20.100 327 17 82 3.28 3.96
1pyfA00 82.54 Protein iolSBacillus subtilisMyo-inositol catabolism protein IolS [EC:1.1.1.-] 3.20.20.100 309 21 82 2.94 3.57
1ur3M00 80.89 Escherichia coli K-12Oxidoreductase ydhF 3.20.20.100 290 22 82 3.50 4.23
[1]
Displaying entries 1 to 4 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1mi3A00
SIPDIKLSSGHLMPSIGFGCWKLANATAGEQVYQAIKAGYRLFDGAEDYGNEKEVGDGVKRAIDEGLVKREEIFLTSKLW
NNYHDPKNVETALNKTLADLKVDYVDLFLIHFPIAFKFVPIEEKYPPGFYCGDGNNFVYEDVPILETWKALEKLVAAGKI
KSIGVSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQPKLIEFAQKAGVTITAYSSFGPQSFVEMNQGRALNTPTLFAHD
TIKAIAAKYNKTPAEVLLRWAAQRGIAVIPKSNLPERLVQNRSFNTFDLTKEDFEEIAKLDIGLRFNDPWDWDNIPIFV
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1mi3A00
MSASIPDIKLSSGHLMPSIGFGCWKLANATAGEQVYQAIKAGYRLFDGAEDYGNEKEVGDGVKRAIDEGLVKREEIFLTS
KLWNNYHDPKNVETALNKTLADLKVDYVDLFLIHFPIAFKFVPIEEKYPPGFYCGDGNNFVYEDVPILETWKALEKLVAA
GKIKSIGVSNFPGALLLDLLRGATIKPAVLQVEHHPYLQQPKLIEFAQKAGVTITAYSSFGPQSFVEMNQGRALNTPTLF
AHDTIKAIAAKYNKTPAEVLLRWAAQRGIAVIPKSNLPERLVQNRSFNTFDLTKEDFEEIAKLDIGLRFNDPWDWDNIPI
FV
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"