CATH Domain: 1mgtA02 XML data for domain: 1mgtA02

Molscript image for 1mgtA02
1mgtA02
PDB coordinates for domain 1mgtA02

PDB 1mgt, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.11
1.10.10.10.11.1
1.10.10.10.11.1.1
1.10.10.10.11.1.1.1
1.10.10.10.11.1.1.1.1

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Segment boundaries for domain 1mgtA02

Chopping figure for domain 1mgtA02
DomainStart PDB ResidueStop PDB Residue
1mgtA01 1 88
1mgtA02 89 169

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 1.10.10.10.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wrjA02 94.61 Methylated-DNA--protein-cysteine methyltransferaseSulfolobus tokodaiiMethylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] 1.10.10.10 83 41 96 0.89 0.92
1sfuA00 81.98 Yaba-like disease virus34L protein 1.10.10.10 70 7 81 3.84 4.71
1d3yA01 79.97 DNA topoisomerase VI subunit A [EC:5.99.1.3]Methanocaldococcus jannaschiiType II DNA topoisomerase VI subunit A 1.10.10.10 71 5 72 3.12 4.28
2ia0A01 79.78 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 1.10.10.10 54 11 60 2.10 3.47
1o57A01 79.03 Pur operon repressorBacillus subtilisPurine operon repressor 1.10.10.10 72 6 80 3.86 4.81
2dbbB01 78.34 Pyrococcus horikoshiiUncharacterized HTH-type transcriptional regulator PH0061 1.10.10.10 55 18 61 3.07 4.97
2p5vA01 78.24 Neisseria meningitidis serogroup BTranscriptional regulator, AsnC familyLrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 1.10.10.10 52 15 60 2.97 4.91
2hyjA01 78.10 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 17 51 2.22 4.28
1biaA01 77.40 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 1.10.10.10 64 18 77 3.88 4.99
2a6hF02 77.36 Thermus thermophilus HB8RNA polymerase sigma factorRNA polymerase primary sigma factor 1.10.10.10 54 14 58 2.58 4.45
1sauA02 77.19 Archaeoglobus fulgidusSulfite reductase, desulfoviridin-type subunit gamma (DsvC) 1.10.10.370 70 11 71 3.36 4.69
2ibdA01 76.87 Rhodococcus jostii RHA1Possible transcriptional regulator 1.10.10.60 45 8 51 2.33 4.49
2raeA01 76.81 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 6 50 2.12 4.19
3ccyA01 76.61 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 15 51 2.19 4.22
2fd5A01 76.31 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.60 48 8 51 2.20 4.24
1b4aA01 75.15 Geobacillus stearothermophilusArginine repressor 1.10.10.10 59 16 54 2.71 4.99
1hsjA03 75.11 Staphylococcus aureus subsp. aureus NCTC 8325HTH-type transcriptional regulator sarR 1.10.10.10 82 7 62 2.96 4.76
1rktA01 74.81 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yfiR 1.10.10.60 52 9 50 2.34 4.62
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Displaying entries 1 to 18 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mgtA02
VTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAHDGIGYYSSGIEEKKFLLEIEG
V
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mgtA02
VTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAHDGIGYYSSGIEEKKFLLEIEG
VKEWTS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"