CATH Domain: 1mgqF00 XML data for domain: 1mgqF00

Molscript image for 1mgqF00
1mgqF00
PDB coordinates for domain 1mgqF00

PDB 1mgq, Chain F, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.3
2.30.30.100.3.1
2.30.30.100.3.1.1
2.30.30.100.3.1.1.1
2.30.30.100.3.1.1.1.1

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Segment boundaries for domain 1mgqF00

Chopping figure for domain 1mgqF00
DomainStart PDB ResidueStop PDB Residue
1mgqF00 12 81

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.30.30.100.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n9rB00 92.58 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 39 92 1.20 1.29
1d3bC00 92.13 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D3Small nuclear ribonucleoprotein D3Spliceosomal complex 2.30.30.100 71 20 97 1.89 1.94
1ljoA00 91.75 Archaeoglobus fulgidusSnRNP, putative 2.30.30.100 75 31 93 1.60 1.71
1b34B00 91.31 SpliceosomeSpliceosomal complexSmall nuclear ribonucleoprotein Sm D2Homo sapiensSmall nuclear ribonucleoprotein D2 2.30.30.100 74 28 87 1.41 1.61
1m5q101 91.09 Pyrobaculum aerophilumSmall nuclear ribonucleoprotein homolog (Sm-like) 2.30.30.100 67 26 90 1.21 1.34
1d3bB00 89.37 Small nuclear ribonucleoprotein-associated proteins B and B'Spliceosomal complexU7 snRNPHomo sapiensProtein binding 2.30.30.100 81 34 81 1.54 1.89
1b34A00 89.37 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 25 86 1.90 2.20
3bw1A00 89.00 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 45 81 2.17 2.67
1ib8A02 83.78 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 17 87 2.66 3.05
3by7E00 82.28 2.30.30.100 74 8 74 2.04 2.74
1nvpD02 81.64 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 28 61 2.20 3.58
1nh2D02 80.69 Transcription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein bindingBasal transcription factorsTranscription initiation factor IIA small subunit 2.30.18.10 48 8 64 2.79 4.34
1biaA03 80.67 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 23 65 2.56 3.90
2k57A00 80.53 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 18 71 2.83 3.96
1pm3A00 78.18 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 2.30.30.240 69 10 77 3.44 4.46
1mhnA00 77.32 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 11 77 3.84 4.98
2g3rA01 77.15 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 11 70 3.15 4.50
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mgqF00
QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mgqF00
GSVIDVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVY
ISP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"