CATH Domain: 1mdoA02 XML data for domain: 1mdoA02

Molscript image for 1mdoA02
1mdoA02
PDB coordinates for domain 1mdoA02

PDB 1mdo, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.1150 Aspartate Aminotransferase, domain 1
3.90.1150.10 Aspartate Aminotransferase, domain 1 Gene3D
3.90.1150.10.17
3.90.1150.10.17.1
3.90.1150.10.17.1.1
3.90.1150.10.17.1.1.1
3.90.1150.10.17.1.1.1.1

[top]
Segment boundaries for domain 1mdoA02

Chopping figure for domain 1mdoA02
DomainStart PDB ResidueStop PDB Residue
1mdoA01 9 106
1mdoA01 113 258
1mdoA02 259 384

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 3.90.1150.10.17.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m32A01 81.81 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.90.1150.10 110 10 77 2.72 3.52
1eg5B01 81.26 Thermotoga maritimaThiamine metabolismCysteine desulfurase [EC:2.8.1.7]Aminotransferase, class V 3.90.1150.10 106 11 74 2.95 3.94
1jg8A02 80.85 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.90.1150.10 96 10 73 2.58 3.49
3ftbA01 80.50 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathwaysPhenylalanine metabolism 3.90.1150.10 112 8 73 2.46 3.33
1fc4A02 79.02 Glycine, serine and threonine metabolismLigase activityMetal ion binding2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.90.1150.10 133 13 70 3.48 4.92
1d2fB01 78.62 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.90.1150.10 124 8 76 3.24 4.23
3ffhA01 78.57 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolism 3.90.1150.10 131 11 67 2.47 3.68
1iugA01 78.56 Thermus thermophilusAspartate aminotransferase 3.90.1150.10 111 7 78 2.97 3.81
1uu2B01 78.55 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.90.1150.10 117 5 66 2.62 3.93
1djuB01 77.68 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.90.1150.10 143 3 65 2.59 3.98
1svvB02 76.87 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.90.1150.10 88 11 69 3.29 4.71
2qmaA02 75.61 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.90.1150.10 122 13 73 3.44 4.70
3dydA01 75.24 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityMetabolic pathwaysPhenylalanine metabolismUbiquinone and other terpenoid-quinone biosynthesis 3.90.1150.10 137 6 67 3.13 4.66
3d6kA01 74.55 Corynebacterium diphtheriaePutative uncharacterized protein 3.90.1150.10 158 8 60 2.97 4.94
1xi9B01 73.52 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.90.1150.10 144 3 64 3.11 4.82
1c7nA01 73.26 Treponema denticolaHemolysin 3.90.1150.10 164 7 56 2.82 4.97
[1]
Displaying entries 1 to 16 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1mdoA02
LDALNARRAAIAAQYHQAADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALASLKTKGIGTGLHFRAAHTQKYYR
ERFPTLTLPDTEWNSERICSLPLFPDTESDFDRVITALHQIAG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1mdoA02
LDALNARRAAIAAQYHQAXADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALXASLKTKGIGTGLHFRAAHTQKY
YRERFPTLTLPDTEWNSERICSLPLFPDXTESDFDRVITALHQIAGQGSHHHHHH
BLAST against CATH

[top]
Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 17:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"