CATH Domain: 1mdoA01 XML data for domain: 1mdoA01

Molscript image for 1mdoA01
1mdoA01
PDB coordinates for domain 1mdoA01

PDB 1mdo, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.28
3.40.640.10.28.1
3.40.640.10.28.1.1
3.40.640.10.28.1.1.1
3.40.640.10.28.1.1.1.1

Segment boundaries for domain 1mdoA01

Chopping figure for domain 1mdoA01
DomainStart PDB ResidueStop PDB Residue
1mdoA01 9 106
1mdoA01 113 258
1mdoA02 259 384

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.40.640.10.28.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o69A01 89.17 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 29 92 1.97 2.13
1o4sA02 83.03 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 17 82 3.27 3.97
1gd9A02 82.58 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 14 83 3.41 4.10
1fc4A01 82.17 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 18 86 3.29 3.78
1xi9A02 80.97 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 15 83 3.58 4.27
1c7nA02 80.45 Treponema denticolaHemolysin 3.40.640.10 225 10 82 3.36 4.06
3dydA02 80.35 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 10 83 3.61 4.34
3ffhB02 80.32 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 11 81 3.40 4.15
3ftbA02 80.03 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 12 86 3.10 3.57
1svvA01 79.87 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 13 85 2.99 3.51
1fg7A01 79.25 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 10 76 3.02 3.92
1d2fA02 79.19 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 15 85 3.64 4.27
1uu1A02 78.89 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 13 79 3.24 4.07
2gsaA02 78.46 Porphyrin and chlorophyll metabolismGlutamate-1-semialdehyde 2,1-aminomutaseGlutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]Synechococcus elongatus PCC 6301Metabolic pathways 3.40.640.10 249 11 79 3.63 4.54
1m32A02 77.37 2-aminoethylphosphonate--pyruvate transaminaseSalmonella enterica subsp. enterica serovar Typhimurium2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]Phosphonate and phosphinate metabolismMetabolic pathways 3.40.640.10 237 14 83 4.00 4.81
Displaying entries 1 to 15 (page 1 of 1)


Domain ATOM Sequence

>pdb|1mdoA01
DFLPFSRPAGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGHIALALGIGEGDEVITPSTWVST
LNIVLLGANPVVLVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAI
FSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDQAEVLAPGYKYNLPDLNAAIALAQLQK    

Domain COMBS Sequence

>pdb|1mdoA01
XAEGKXXSDFLPFSRPAXGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGXHIALXALGIGEGD
EVITPSXTWVSTLNXIVLLGANPVXVLXVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATG
TSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPD
LNAAIALAQLQK    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 17:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"