CATH Domain: 1mdlA02 XML data for domain: 1mdlA02

Molscript image for 1mdlA02
1mdlA02
PDB coordinates for domain 1mdlA02

PDB 1mdl, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.120 Enolase superfamily Gene3D
3.20.20.120.18
3.20.20.120.18.1
3.20.20.120.18.1.1
3.20.20.120.18.1.1.1
3.20.20.120.18.1.1.1.1

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Segment boundaries for domain 1mdlA02

Chopping figure for domain 1mdlA02
DomainStart PDB ResidueStop PDB Residue
1mdlA01 3 120
1mdlA01 351 358
1mdlA02 121 350

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.20.20.120.18.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ovlA02 89.31 Toluene and xylene degradationStreptomyces coelicolorMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylationPutative racemase 3.20.20.120 223 31 96 1.29 1.34
3cb3A02 89.09 Toluene and xylene degradationPolaromonas sp. JS666Mandelate racemase [EC:5.1.2.2]Mandelate racemase/muconate lactonizing enzymeBenzoate degradation via hydroxylation 3.20.20.120 233 28 98 1.64 1.66
3cyjA02 87.65 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like proteinToluene and xylene degradationMandelate racemase [EC:5.1.2.2]Benzoate degradation via hydroxylation 3.20.20.120 235 25 95 1.62 1.69
2oz8A02 87.38 Mesorhizobium lotiMll7089 protein 3.20.20.120 230 25 96 1.83 1.89
1yeyB02 86.74 Xanthomonas campestris pv. campestrisRTS beta protein 3.20.20.120 243 27 88 1.81 2.06
3bjsA02 86.50 Polaromonas sp. JS666Mandelate racemase/muconate lactonizing enzyme 3.20.20.120 250 29 90 1.65 1.83
2hzgA02 86.35 Rhodobacter sphaeroides 2.4.1Mandelate racemase/muconate lactonizing enzyme/Enolase superfamily 3.20.20.120 248 26 92 1.99 2.15
2nqlA02 85.67 Agrobacterium tumefaciens str. C58Isomerase/lactonizing enzyme 3.20.20.120 214 20 89 2.10 2.36
2pgwA02 85.53 Sinorhizobium melilotiToluene and xylene degradationBenzoate degradation via hydroxylationMuconate cycloisomerase [EC:5.5.1.1]Mandelate racemase/muconate lactonizing enzyme family protein 3.20.20.120 215 19 89 1.95 2.18
2qq6A02 85.23 Rubrobacter xylanophilus DSM 9941Mandelate racemase/muconate lactonizing enzyme-like protein 3.20.20.120 262 23 83 2.11 2.54
1tkkA02 85.23 Bacillus subtilisL-Ala-D/L-Glu epimerase 3.20.20.120 244 22 94 2.00 2.12
2oqyA02 84.78 Muconate cycloisomeraseOceanobacillus iheyensis 3.20.20.120 226 15 90 2.11 2.32
2podB02 84.23 Mandelate racemase / muconate lactonizing enzymeBurkholderia pseudomallei 3.20.20.120 251 23 86 1.97 2.27
3go2A02 84.17 Burkholderia xenovorans LB400Putative uncharacterized protein 3.20.20.120 268 23 82 2.07 2.51
2chrA02 83.95 Ralstonia eutropha JMP134Chloromuconate cycloisomeraseToluene and xylene degradationMuconate cycloisomerase [EC:5.5.1.1]Benzoate degradation via hydroxylation 3.20.20.120 202 17 84 2.06 2.43
2qddA02 83.68 Mandelate racemase/muconate lactonizing enzyme, putativeRoseovarius nubinhibens ISM 3.20.20.120 236 22 94 2.53 2.67
1ec7A02 81.49 Ascorbate and aldarate metabolismD-glucarate catabolic processGlucarate dehydratase activityGlucarate dehydrataseGlucarate dehydratase [EC:4.2.1.40] 3.20.20.120 261 18 82 2.45 2.96
1jpdX02 80.41 Racemase and epimerase activity, acting on amino acids and derivativesL-Ala-D/L-Glu epimeraseEscherichia coli K-12 3.20.20.120 207 17 86 2.53 2.92
3cawA02 79.06 Ubiquinone and other terpenoid-quinone biosynthesisO-succinylbenzoate synthase [EC:4.2.1.113]Bdellovibrio bacteriovorusMetabolic pathwaysPutative uncharacterized protein 3.20.20.120 225 11 89 3.61 4.05
1r6wA01 77.41 Ubiquinone and other terpenoid-quinone biosynthesisMetabolic pathwaysMenaquinone biosynthetic processO-succinylbenzoate synthaseHydro-lyase activity 3.20.20.120 198 13 81 3.39 4.15
2otdA01 73.85 Glycerophospholipid metabolismShigella flexneriGlycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]Glycerophosphodiester phosphodiesterase 3.20.20.190 222 6 72 3.21 4.45
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Displaying entries 1 to 21 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mdlA02
TPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSL
DVPAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGW
IRASALAQQFGIPMSSHLFQEISAHLLAATPTAHWLERLDLAGSVIEPTLTFEGGNAVIPDLPGVGIIWR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mdlA02
TPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSL
DVPAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGW
IRASALAQQFGIPMSSHLFQEISAHLLAATPTAHWLERLDLAGSVIEPTLTFEGGNAVIPDLPGVGIIWR
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1mdl002" to "1mdlA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Insertion by lewis on 18 Jan 2007 19:49

Rechopping chains just before release v3.1.0 in order to fix missing fragments.

Domain assigned by lewis on 18 Jan 2007 19:49

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.