CATH Domain: 1mdbA01 XML data for domain: 1mdbA01

Molscript image for 1mdbA01
1mdbA01
PDB coordinates for domain 1mdbA01

PDB 1mdb, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.980 Gene3D
3.40.50.980.3
3.40.50.980.3.1
3.40.50.980.3.1.1
3.40.50.980.3.1.1.1
3.40.50.980.3.1.1.1.1

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Segment boundaries for domain 1mdbA01

Chopping figure for domain 1mdbA01
DomainStart PDB ResidueStop PDB Residue
1mdbA01 22 179
1mdbA02 180 353
1mdbA03 354 429
1mdbA04 430 536

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.980.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t5hX01 85.19 4-chlorobenzoyl CoA ligaseAlcaligenes sp. AL3007 3.40.50.980 166 23 83 1.91 2.28
2r25B00 74.48 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 8 65 3.24 4.97
1bykA02 72.24 Specific transcriptional repressor activityLacI family transcriptional regulator, trehalose operon repressorSequence-specific DNA binding transcription factor activityTranscriptionHTH-type transcriptional regulator treR 3.40.50.2300 117 10 61 2.99 4.87
1m1nB03 72.18 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 9 45 2.27 4.98
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1mdbA01
WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL
PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1mdbA01
WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL
PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"