CATH Domain: 1md6A00 XML data for domain: 1md6A00

Molscript image for 1md6A00
1md6A00
PDB coordinates for domain 1md6A00

PDB 1md6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.13
2.80.10.50.13.1
2.80.10.50.13.1.1
2.80.10.50.13.1.1.1
2.80.10.50.13.1.1.1.1

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Segment boundaries for domain 1md6A00

Chopping figure for domain 1md6A00
DomainStart PDB ResidueStop PDB Residue
1md6A00 1 154

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 2.80.10.50.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fdbN00 82.51 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 12 83 3.21 3.86
1upsA02 81.96 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 11 83 3.18 3.80
1ihkA00 81.09 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 8 80 3.26 4.03
1jlxA02 80.88 Amaranthus caudatusAgglutinin 2.80.10.50 140 7 85 4.01 4.71
1n4kA01 80.39 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 7 79 3.52 4.41
1dfcA02 80.17 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 76 3.27 4.27
1sr4A00 79.93 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 9 82 3.87 4.72
1m2tB02 79.91 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 7 77 3.20 4.11
1dfcA01 79.77 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 6 75 2.91 3.83
1dfcA03 79.70 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 13 77 3.06 3.93
1vclA02 79.56 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 11 80 3.47 4.31
1w3fA01 79.43 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 9 87 4.11 4.69
1dfcA04 78.20 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 7 66 2.92 4.37
1hcdA00 75.74 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 12 76 3.43 4.48
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Displaying entries 1 to 14 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1md6A00
VLSGALCFRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSPVILGVQGGSQCLSCGTEKGPILKLE
PVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTSPEADQPVRLTQIPEDPAWDAPITDFYFQQCD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1md6A00
VLSGALCFRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSPVILGVQGGSQCLSCGTEKGPILKLE
PVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTSPEADQPVRLTQIPEDPAWDAPITDFYFQQCD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"