CATH Domain: 1m93B02 XML data for domain: 1m93B02

Molscript image for 1m93B02
1m93B02
PDB coordinates for domain 1m93B02

PDB 1m93, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.39 Alpha-1-antitrypsin; domain 1
2.30.39.10 Alpha-1-antitrypsin, domain 1 Gene3D
2.30.39.10.4
2.30.39.10.4.1
2.30.39.10.4.1.1
2.30.39.10.4.1.1.1
2.30.39.10.4.1.1.1.1

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Segment boundaries for domain 1m93B02

Chopping figure for domain 1m93B02
DomainStart PDB ResidueStop PDB Residue
1m93B01 56 132
1m93B01 241 283
1m93B01 294 300
1m93B02 133 240
1m93B02 284 293

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 2.30.39.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1a7cA02 90.66 Plasminogen activator inhibitor-1Positive regulation of monocyte chemotaxisChagas diseaseCellular response to chemical stimulusNegative regulation of endopeptidase activity 2.30.39.10 120 28 97 3.36 3.45
1sekA02 89.86 Manduca sextaSerine protease inhibitor 2.30.39.10 117 35 97 2.49 2.55
3dy0A02 88.18 MembraneAcrosin bindingHeparin bindingExtracellular regionSerine-type endopeptidase inhibitor activity 2.30.39.10 105 20 83 2.81 3.35
2h4pA02 87.82 Gallus gallusHeterochromatin-associated protein MENT 2.30.39.10 102 38 80 1.32 1.64
3f02B02 86.09 Peripheral nervous system developmentNeuroserpinHomo sapiensCentral nervous system developmentSerine-type endopeptidase inhibitor activity 2.30.39.10 99 23 82 2.03 2.47
1hp7A01 85.83 Alpha-1-antitrypsinProtease bindingAlpha-1-antitrypsinHomo sapiensExtracellular space 2.30.39.10 95 27 80 1.69 2.10
1jmoA02 85.00 Heparin cofactor IIHomo sapiensHeparin cofactor 2Complement and coagulation cascades 2.30.39.10 150 31 70 3.22 4.56
2b5tI02 84.93 Antithrombin IIIProtease bindingHomo sapiensAntithrombin-IIIExtracellular space 2.30.39.10 146 27 67 1.79 2.67
1lj5A02 84.90 Positive regulation of monocyte chemotaxisPlasminogen activator inhibitor-1Chagas diseaseCellular response to chemical stimulusNegative regulation of endopeptidase activity 2.30.39.10 154 29 75 2.84 3.74
1mtpA02 84.17 Proteinase inhibitor I4, serpinThermobifida fusca YX 2.30.39.10 91 16 77 2.13 2.76
1k9oI02 83.43 Manduca sextaAlaserpinProtein binding 2.30.39.10 161 34 71 3.32 4.65
1imvA01 82.98 Negative regulation of angiogenesisHomo sapiensPigment epithelium-derived factorCell proliferationPositive regulation of neurogenesis 2.30.39.10 169 25 68 3.20 4.66
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m93B02
FKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ
NLTDTNFKKWSDSMDAMFIDVHIPKFKVIDVNEEYTEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m93B02
FKAKWLMPFEKEFTSDYPFYVSPTEMVDVSMMSMYGEAFNHASVKESFGNFSIIELPYVGDTSMVVILPDNIDGLESIEQ
NLTDTNFKKWSDSMDAMFIDVHIPKFKVIDVNEEYTEA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"