CATH Domain: 1m7yA02 XML data for domain: 1m7yA02

Molscript image for 1m7yA02
1m7yA02
PDB coordinates for domain 1m7yA02

PDB 1m7y, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.640 Aspartate Aminotransferase; domain 2
3.40.640.10 Type I PLP-dependent aspartate aminotransferase-like (Major domain) Gene3D
3.40.640.10.8
3.40.640.10.8.1
3.40.640.10.8.1.1
3.40.640.10.8.1.1.1
3.40.640.10.8.1.1.1.1

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Segment boundaries for domain 1m7yA02

Chopping figure for domain 1m7yA02
DomainStart PDB ResidueStop PDB Residue
1m7yA01 3 62
1m7yA01 320 429
1m7yA02 63 319

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 3.40.640.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o4sA02 85.35 Tyrosine metabolismThermotoga maritimaArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Metabolic pathways 3.40.640.10 221 23 85 2.11 2.48
3dydA02 84.94 Tyrosine metabolismL-tyrosine:2-oxoglutarate aminotransferase activityPhenylalanine metabolismMetabolic pathwaysUbiquinone and other terpenoid-quinone biosynthesis 3.40.640.10 244 19 89 2.28 2.56
1xi9A02 84.94 Pyrococcus furiosusAminotransferase [EC:2.6.1.-]Alanine aminotransferase 3.40.640.10 242 25 89 2.38 2.66
1gd9A02 84.86 Tyrosine metabolismArginine and proline metabolismAspartate aminotransferase [EC:2.6.1.1]Pyrococcus horikoshiiMetabolic pathways 3.40.640.10 223 20 85 2.09 2.44
1c7nA02 84.00 Treponema denticolaHemolysin 3.40.640.10 225 17 85 2.35 2.75
1d2fA02 83.64 Nitrogen metabolismSelenoamino acid metabolismSulfur metabolismMetabolic pathwaysCysteine and methionine metabolism 3.40.640.10 243 17 88 2.30 2.59
1lc5A02 82.54 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumThreonine-phosphate decarboxylaseThreonine-phosphate decarboxylase [EC:4.1.1.81] 3.40.640.10 225 20 85 2.74 3.20
1fg7A01 81.45 Tyrosine metabolismHistidine metabolismMetabolic pathwaysPhenylalanine metabolismNovobiocin biosynthesis 3.40.640.10 203 22 78 2.19 2.79
1uu1A02 80.79 Thermotoga maritimaTyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 203 19 78 2.69 3.41
3ftbA02 80.52 Tyrosine metabolismHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismPhenylalanine metabolismMetabolic pathways 3.40.640.10 222 19 84 2.81 3.33
2hoxA02 80.46 Alliin lyase 1Allium sativum 3.40.640.10 210 16 72 3.33 4.60
3ffhB02 79.81 Tyrosine metabolismListeria innocuaHistidinol-phosphate aminotransferase [EC:2.6.1.9]Histidine metabolismMetabolic pathways 3.40.640.10 208 18 80 3.30 4.12
2ez2A02 79.80 Citrobacter freundiiTyrosine phenol-lyase 3.40.640.10 253 11 84 3.69 4.35
3dr4C01 79.70 Perosamine synthetasePerosamine synthetaseCaulobacter vibrioides 3.40.640.10 236 13 79 3.79 4.77
1mdoA01 79.47 Amino sugar and nucleotide sugar metabolismUDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseTwo-component systemSalmonella enterica subsp. enterica serovar TyphimuriumUDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase [EC:2.6.1.-] 3.40.640.10 226 11 73 2.92 3.97
1jg8A01 79.35 Thermotoga maritimaThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysL-allo-threonine aldolase 3.40.640.10 245 12 86 3.46 4.01
1o69A01 79.09 Campylobacter jejuniAminotransferase homolog 3.40.640.10 233 12 81 3.52 4.31
1ajsB02 78.88 Tyrosine metabolismArginine and proline metabolismSus scrofaAspartate aminotransferase [EC:2.6.1.1]Aspartate aminotransferase, cytoplasmic 3.40.640.10 278 14 83 3.39 4.04
3d6kA02 78.79 Corynebacterium diphtheriaePutative uncharacterized protein 3.40.640.10 237 13 82 3.59 4.33
1svvA01 78.73 Leishmania major strain FriedlinThreonine aldolase [EC:4.1.2.5]Glycine, serine and threonine metabolismMetabolic pathwaysPutative uncharacterized protein 3.40.640.10 242 16 85 3.34 3.90
1fc4A01 78.59 Glycine, serine and threonine metabolismMetal ion bindingLigase activity2-amino-3-ketobutyrate coenzyme A ligaseGlycine C-acetyltransferase [EC:2.3.1.29] 3.40.640.10 230 11 82 3.98 4.82
1bs0A02 78.55 Biotin metabolismMetabolic pathways8-amino-7-oxononanoate synthase [EC:2.3.1.47]8-amino-7-oxononanoate synthase activityBiotin biosynthetic process 3.40.640.10 228 10 80 3.75 4.63
3b8xA01 78.43 Amino sugar and nucleotide sugar metabolismPutative pyridoxamine 5-phosphate-dependent dehydraseEscherichia coliCDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase 3.40.640.10 258 11 77 3.77 4.86
1p3wA02 77.25 Thiamine metabolismCysteine desulfurase activitySelenocysteine lyase activityCysteine desulfuraseIron-sulfur cluster assembly 3.40.640.10 247 13 82 3.71 4.52
1zodA02 75.72 2,2-dialkylglycine decarboxylaseBurkholderia cepacia 3.40.640.10 264 8 82 4.06 4.94
1eluA02 75.30 Synechocystis sp. PCC 6714L-cysteine/cystine lyase C-DES 3.40.640.10 264 10 81 3.95 4.83
2qmaA03 74.72 Diaminobutyrate-2-oxoglutarate transaminase [EC:2.6.1.76]Vibrio parahaemolyticusGlycine, serine and threonine metabolismDiaminobutyrate-pyruvate transaminase & L-2,4-diaminobutyrate decarboxylaseMetabolic pathways 3.40.640.10 238 12 81 4.04 4.94
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Displaying entries 1 to 27 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m7yA02
PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPT
PYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVED
KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF
GLVSSQTQHLLSAMLSD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m7yA02
PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPT
PYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVED
KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSF
GLVSSQTQHLLSAMLSD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:27

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"