CATH Domain: 1m7lA00 XML data for domain: 1m7lA00

Molscript image for 1m7lA00
1m7lA00
PDB coordinates for domain 1m7lA00

PDB 1m7l, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.360 Gene3D
1.20.5.360.1
1.20.5.360.1.1
1.20.5.360.1.1.1
1.20.5.360.1.1.1.1
1.20.5.360.1.1.1.1.1

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Segment boundaries for domain 1m7lA00

Chopping figure for domain 1m7lA00
DomainStart PDB ResidueStop PDB Residue
1m7lA00 1 40

Structural Neighbourhood (40 entries)

There are 40 matching structural neighberhood comparisons for CATH ID 1.20.5.360.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 40 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jekA00 86.87 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 100 4.02 4.02
1a2xB00 85.87 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 6 75 1.50 2.00
1kilE00 84.90 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 5 87 3.66 4.17
2hr3A01 84.36 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 6 75 2.92 3.89
1hf9A00 84.18 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 10 92 3.45 3.72
1xmeB01 83.28 Cytochrome c oxidase subunit 2Thermus thermophilus 1.20.1070.10 44 12 81 3.65 4.46
2k9yA00 83.20 ApoptosisIntegral to plasma membraneEphrin type-A receptor 2Homo sapiensEph receptor A2 [EC:2.7.10.1] 1.20.5.510 41 5 85 4.05 4.74
2qjyC01 82.95 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 12 82 3.39 4.11
1kv4A00 82.13 Moricin-1Bombyx mori 1.20.5.750 42 5 95 4.51 4.74
1vf5C03 81.47 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 15 80 3.23 4.04
1ifpA00 81.31 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 15 90 3.35 3.69
1kmiZ01 80.70 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 3 65 2.78 4.28
1xrdA01 79.88 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 10 72 2.44 3.38
2p10B02 79.80 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 7 65 2.68 4.12
2zjsE00 79.72 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 15 86 4.13 4.75
1qgkB00 79.66 DNA metabolic processG2 phase of mitotic cell cycleNuclear localization sequence bindingRegulation of DNA recombinationImportin subunit alpha-2 1.20.5.690 44 5 61 2.88 4.69
1go9A00 79.51 1.20.5.480 39 20 85 3.53 4.15
1ybkA00 79.48 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 2 61 2.36 3.83
1omiA02 79.39 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 3 52 0.93 1.77
1u57A00 79.09 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 10 83 2.29 2.75
1ozhA03 78.86 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 4 60 2.07 3.45
1r8eA03 78.84 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 2 56 1.55 2.73
3b4sA02 78.59 Vibrio parahaemolyticusLuxT 1.20.5.830 41 2 53 2.60 4.85
2r44A01 78.40 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 3 62 2.45 3.92
3effK02 78.31 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 5 75 3.71 4.91
1vl2B03 78.00 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 30 6 75 2.84 3.79
2k1aA00 77.86 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 2 69 3.34 4.84
1wa9B03 76.76 Regulation of circadian sleep/wake cycle, sleepPeriod circadian proteinNucleusResponse to temperature stimulusNegative regulation of transcription from RNA polymerase II promoter 1.20.5.770 33 6 57 2.25 3.91
1jocA01 76.53 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 10 51 1.59 3.08
2o01J01 76.37 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 12 62 2.82 4.51
1uixA00 76.35 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 10 51 1.76 3.42
3c8vA04 76.34 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 47 1.13 2.38
1mqsB00 74.66 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 7 65 2.82 4.34
1t6aA01 74.29 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 5 46 1.11 2.39
2i8dA02 72.70 Hypothetical proteinLactobacillus casei ATCC 334Putative uncharacterized protein 1.20.5.420 30 6 50 2.06 4.12
1onvB00 70.07 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 9 52 2.26 4.30
1d66B02 69.79 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 37 0.53 1.41
3ii6A02 68.27 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 7 37 1.48 3.90
2qiwA02 67.89 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 16 40 1.27 3.17
1mkmA02 63.74 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 35 1.21 3.46
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Displaying entries 1 to 40 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m7lA00
GLPDVASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGGI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m7lA00
GLPDVASLRQQVEALQGQVQHLQAAFSQYKKVELFPNGGI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"