CATH Domain: 1m6iA02 XML data for domain: 1m6iA02

Molscript image for 1m6iA02
1m6iA02
PDB coordinates for domain 1m6iA02

PDB 1m6i, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.50 3-Layer(bba) Sandwich
3.50.50 FAD/NAD(P)-binding domain
3.50.50.60 Gene3D
3.50.50.60.25
3.50.50.60.25.1
3.50.50.60.25.1.1
3.50.50.60.25.1.1.1
3.50.50.60.25.1.1.1.1

Segment boundaries for domain 1m6iA02

Chopping figure for domain 1m6iA02
DomainStart PDB ResidueStop PDB Residue
1m6iA01 129 169
1m6iA01 212 261
1m6iA01 403 476
1m6iA02 172 204
1m6iA02 265 397
1m6iA03 481 608

Structural Neighbourhood (21 entries)

There are 21 matching structural neighberhood comparisons for CATH ID 3.50.50.60.25.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 21 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nhpA02 85.76 NADH peroxidaseNADH peroxidase [EC:1.11.1.1]Enterococcus faecalis 3.50.50.60 150 13 87 4.23 4.82
3fg2P02 85.26 Fatty acid metabolismPutative rubredoxin reductaseFerredoxin--NAD+ reductase [EC:1.18.1.3]Phenylalanine metabolismRhodopseudomonas palustris 3.50.50.60 126 17 75 2.04 2.70
2gqwA02 85.15 Ferredoxin reductasePseudomonas sp. KKS102 3.50.50.60 120 21 71 1.82 2.53
1fecA02 83.33 Trypanothione reductaseCrithidia fasciculata 3.50.50.60 120 15 71 2.38 3.31
2eq6A02 83.29 Dihydrolipoyl dehydrogenaseCitrate cycle (TCA cycle)Pyruvate metabolismValine, leucine and isoleucine degradationGlycine, serine and threonine metabolism 3.50.50.60 124 17 71 1.91 2.65
2yquA02 82.60 Dihydrolipoyl dehydrogenaseCitrate cycle (TCA cycle)Pyruvate metabolismValine, leucine and isoleucine degradationGlycine, serine and threonine metabolism 3.50.50.60 119 18 71 2.48 3.45
1onfA02 82.40 Plasmodium falciparum K1Glutathione reductase 3.50.50.60 118 22 70 2.16 3.08
2qaeA02 82.31 Dihydrolipoyl dehydrogenaseTrypanosoma cruzi 3.50.50.60 121 17 71 2.62 3.64
3grsA02 81.94 Glutathione reductase (NADPH) [EC:1.8.1.7]Homo sapiensGlutathione reductase, mitochondrialGlutathione metabolismElectron carrier activity 3.50.50.60 129 13 72 2.54 3.50
2r9zA02 81.64 Marichromatium gracileGlutathione amide reductase 3.50.50.60 118 19 70 2.37 3.35
2nvkX02 81.19 Protein homodimerization activityThioredoxin reductase 1, mitochondrialDetermination of adult lifespanThioredoxin-disulfide reductase activityDrosophila melanogaster 3.50.50.60 123 18 70 2.46 3.48
1xdiA02 80.50 Citrate cycle (TCA cycle)Valine, leucine and isoleucine degradationPyruvate metabolismGlycine, serine and threonine metabolismMetabolic pathways 3.50.50.60 119 21 71 2.87 3.99
1fl2A02 80.05 Alkyl hydroperoxide reductase subunit F [EC:1.6.4.-]Alkyl hydroperoxide reductase subunit FProtein bindingEscherichia coli K-12Cytosol 3.50.50.60 124 17 69 2.86 4.11
1fcdA02 79.60 Allochromatium vinosumSulfide dehydrogenase [flavocytochrome c] flavoprotein chain 3.50.50.60 139 12 69 2.72 3.91
3f8dA02 79.08 NADH oxidase/thioredoxin reductaseSulfolobus solfataricus 3.50.50.60 123 13 69 3.09 4.45
1ps9A03 78.88 2,4-dienoyl-CoA reductase (NADPH2) [EC:1.3.1.34]Escherichia coli K-122,4-dienoyl-CoA reductase [NADPH] 3.50.50.60 157 12 74 3.58 4.81
2zbwA02 78.47 Pyrimidine metabolismThermus thermophilus HB8Thioredoxin reductase (NADPH) [EC:1.8.1.9]Ferredoxin--NADP reductase 3.50.50.60 122 10 70 3.18 4.53
1o94A03 78.39 Methylophilus methylotrophusTrimethylamine dehydrogenase 3.50.50.60 152 10 70 3.22 4.59
1mo9A02 77.52 2-oxopropyl-CoM reductase, carboxylatingXanthobacter autotrophicus Py2 3.50.50.60 135 7 60 3.04 4.99
3fbsA02 77.01 Agrobacterium tumefaciens str. C58Oxidoreductase 3.50.50.60 107 12 63 2.66 4.19
2gv8A02 76.02 Thiol-specific monooxygenaseMitochondrionSchizosaccharomyces pombe 3.50.50.60 105 15 62 2.80 4.50
Displaying entries 1 to 21 (page 1 of 1)


Domain ATOM Sequence

>pdb|1m6iA02
RPPLSKELWFSPNVTKTLRFKQWNGKERSIYRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGS
ELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDH
IVAA    

Domain COMBS Sequence

>pdb|1m6iA02
RPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFL
GSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVET
DHIVAA    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"