CATH Domain: 1m5yA03 XML data for domain: 1m5yA03

Molscript image for 1m5yA03
1m5yA03
PDB coordinates for domain 1m5yA03

PDB 1m5y, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.50 Chitinase A; domain 3
3.10.50.40 Gene3D
3.10.50.40.8
3.10.50.40.8.1
3.10.50.40.8.1.1
3.10.50.40.8.1.1.1
3.10.50.40.8.1.1.1.1

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Segment boundaries for domain 1m5yA03

Chopping figure for domain 1m5yA03
DomainStart PDB ResidueStop PDB Residue
1m5yA01 25 148
1m5yA02 163 276
1m5yA02 396 420
1m5yA03 280 386

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.10.50.40.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2jzvA00 88.83 Foldase protein prsAFoldase protein PrsA [EC:5.2.1.8]Staphylococcus aureus subsp. aureus Mu50 3.10.50.40 111 32 92 2.71 2.92
1fjdA00 79.33 SpindlePeptidyl-prolyl cis-trans isomerase NIMA-interacting 4RRNA processingMitochondrial matrixNucleolus 3.10.50.40 104 26 86 3.49 4.02
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m5yA03
ISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTR
LNKGQMSAPVHSSFGWHLIELLDTRNV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m5yA03
ISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTR
LNKGQMSAPVHSSFGWHLIELLDTRNV
BLAST against CATH

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Domain History Events (7)

Domain assigned by lewis on 09 Jan 2007 13:16

Assigning domain 1m5yA03 to 3.10.50.40 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to the old domain 1m5yA03 (from the previous chopping at "Sun Mar 5 17:12:57 2006") which was in 3.10.50.40 at the time the chain was unchopped.

Flow stage update by auto on 15 Dec 2006 07:35

No satisfactory AssignClose result found.

Flow stage update by auto on 15 Dec 2006 07:33

No in_process hits for Domain "1m5yA03" ready to be processed

Flow stage update by auto on 15 Dec 2006 07:33

NW result present for Domain "1m5yA03"

Flow stage update by auto on 14 Dec 2006 15:49

All required files are present for Domain "1m5yA03"

Flow stage update by auto on 14 Dec 2006 15:49

Beginning processing for Domain "1m5yA03"

Insertion by cuff on 14 Dec 2006 13:06

nice selection of choppings