CATH Domain: 1m5q101 XML data for domain: 1m5q101

Molscript image for 1m5q101
1m5q101
PDB coordinates for domain 1m5q101

PDB 1m5q, Chain 1, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.4
2.30.30.100.4.1
2.30.30.100.4.1.1
2.30.30.100.4.1.1.1
2.30.30.100.4.1.1.1.1

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Segment boundaries for domain 1m5q101

Chopping figure for domain 1m5q101
DomainStart PDB ResidueStop PDB Residue
1m5q101 12 79
1m5q102 80 137

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.30.30.100.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1d3bC00 91.68 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D3Small nuclear ribonucleoprotein D3Spliceosomal complex 2.30.30.100 71 20 91 1.36 1.49
1ljoA00 90.09 Archaeoglobus fulgidusSnRNP, putative 2.30.30.100 75 17 85 1.40 1.64
1n9rB00 89.69 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 23 91 1.62 1.77
1b34A00 88.46 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 20 83 1.62 1.93
1b34B00 87.88 SpliceosomeSpliceosomal complexSmall nuclear ribonucleoprotein Sm D2Homo sapiensSmall nuclear ribonucleoprotein D2 2.30.30.100 74 16 89 1.79 2.01
1d3bB00 87.38 Small nuclear ribonucleoprotein-associated proteins B and B'Spliceosomal complexU7 snRNPHomo sapiensProtein binding 2.30.30.100 81 13 80 2.21 2.75
3bw1A00 87.24 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 25 77 2.64 3.39
1ib8A02 85.56 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 14 91 2.41 2.65
1biaA03 81.81 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 14 70 2.32 3.31
3by7E00 81.50 2.30.30.100 74 13 72 2.66 3.65
2k57A00 80.99 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 9 77 2.73 3.52
3fb9B00 79.68 Streptococcus pneumoniaePutative uncharacterized protein 2.30.30.100 84 11 73 3.53 4.78
1nvpD02 79.60 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 17 59 2.36 3.95
1mhnA00 79.01 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 15 85 3.58 4.21
2g3rA01 78.63 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 11 79 2.79 3.53
2hqxA01 77.04 Staphylococcal nuclease domain-containing protein 1NucleusGolgi apparatusTranscription cofactor activityHomo sapiens 2.30.30.140 81 11 71 3.45 4.82
1khcA01 76.84 Protein complex localizationRegulation of gene expression by genetic imprintingDNA (cytosine-5)-methyltransferase 3BChromosome, centromeric regionProtein binding 2.30.30.160 65 4 85 3.86 4.54
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1m5q101
FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIYRYIVHIDSTERR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1m5q101
FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGEKFNRVFIXYRYIVHIDSTERR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"